The-Sequence-Ontology / Specifications

Related projects ⓘ

Alternatives and complementary repositories for Specifications

• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆202Updated 11 months ago
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆253Updated 4 months ago
• snakemake-workflows / dna-seq-gatk-variant-calling
  This Snakemake pipeline implements the GATK best-practices workflow
  ☆243Updated last year
• TransDecoder / TransDecoder
  TransDecoder source
  ☆276Updated last month
• daler / gffutils
  GFF and GTF file manipulation and interconversion
  ☆289Updated 7 months ago
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆231Updated 2 weeks ago
• Magdoll / cDNA_Cupcake
  Miscellaneous collection of Python and R scripts for processing Iso-Seq data
  ☆257Updated last year
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆213Updated 3 years ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆192Updated 3 weeks ago
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆226Updated last year
• OpenGene / AfterQC
  Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data
  ☆207Updated 4 years ago
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆205Updated 4 months ago
• ryanlayer / samplot
  Plot structural variant signals from many BAMs and CRAMs
  ☆530Updated 4 months ago
• timflutre / trimmomatic
  Read trimming tool for Illumina NGS data.
  ☆127Updated 9 years ago
• pcingola / SnpEff
  ☆256Updated 3 weeks ago
• comprna / SUPPA
  SUPPA: Fast quantification of splicing and differential splicing
  ☆262Updated 5 months ago
• genome / bam-readcount
  Count bases in BAM/CRAM files
  ☆305Updated 2 years ago
• brentp / smoove
  structural variant calling and genotyping with existing tools, but, smoothly.
  ☆236Updated 5 months ago
• ACEnglish / truvari
  Structural variant toolkit for VCFs
  ☆323Updated last week
• sortmerna / sortmerna
  SortMeRNA: next-generation sequence filtering and alignment tool
  ☆246Updated last month
• broadinstitute / gatk-sv
  A structural variation pipeline for short-read sequencing
  ☆171Updated this week
• abyzovlab / CNVnator
  a tool for CNV discovery and genotyping from depth-of-coverage by mapped reads
  ☆211Updated 2 years ago
• PapenfussLab / gridss
  GRIDSS: the Genomic Rearrangement IDentification Software Suite
  ☆258Updated 10 months ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆128Updated last year
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆271Updated last month
• dkoboldt / varscan
  Variant calling and somatic mutation/CNV detection for next-generation sequencing data
  ☆154Updated last year
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆199Updated this week
• fritzsedlazeck / SURVIVOR
  Toolset for SV simulation, comparison and filtering
  ☆356Updated 11 months ago
• RealTimeGenomics / rtg-tools
  RTG Tools: Utilities for accurate VCF comparison and manipulation
  ☆301Updated 5 months ago
• aidenlab / 3d-dna
  3D de novo assembly (3D DNA) pipeline
  ☆207Updated 11 months ago