The-Sequence-Ontology / SpecificationsLinks
GFF and GVF specification documents
☆215Updated last year
Alternatives and similar repositories for Specifications
Users that are interested in Specifications are comparing it to the libraries listed below
Sorting:
- GFF and GTF file manipulation and interconversion☆308Updated last year
- Read trimming tool for Illumina NGS data.☆146Updated 10 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆242Updated 2 months ago
- Count bases in BAM/CRAM files☆318Updated 3 years ago
- BEDOPS: high-performance genomic feature operations☆351Updated 5 months ago
- Genome Assembly and Annotation Service code☆214Updated last year
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆272Updated 3 weeks ago
- Windowed Adaptive Trimming for fastq files using quality☆224Updated 8 years ago
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆275Updated 2 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆163Updated 2 years ago
- TransDecoder source☆298Updated last week
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆277Updated 8 months ago
- Documentation for the ANNOVAR software☆244Updated 2 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆241Updated 4 years ago
- This Snakemake pipeline implements the GATK best-practices workflow☆259Updated 2 years ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆223Updated 2 months ago
- UCSC Genome Browser source. "beta" is released version / "master" is testing.☆243Updated this week
- Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data☆212Updated 5 years ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆277Updated last month
- FASTA/FASTQ pre-processing programs☆190Updated 3 years ago
- An overview of all nanopack tools☆270Updated 2 years ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated last week
- ☆291Updated last month
- Pipeline to fetch metadata and raw FastQ files from public databases☆181Updated 2 months ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆283Updated 11 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 2 months ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆178Updated last week
- Program for aligning DNA sequences, a pairwise aligner.☆227Updated 3 months ago
- 3D de novo assembly (3D DNA) pipeline☆216Updated last year
- Nanopore demultiplexing, QC and alignment pipeline☆211Updated 3 months ago