GFF and GVF specification documents
☆220Jun 18, 2024Updated last year
Alternatives and similar repositories for Specifications
Users that are interested in Specifications are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GFF and GTF file manipulation and interconversion☆319Mar 31, 2026Updated 2 months ago
- GenomeTools genome analysis system.☆336Nov 10, 2025Updated 6 months ago
- Mummer alignment tool☆560Feb 4, 2025Updated last year
- bedtools - the swiss army knife for genome arithmetic☆1,038Mar 11, 2025Updated last year
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆571May 18, 2026Updated 3 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆484Apr 10, 2026Updated last month
- TreeBeST: Tree Building guided by Species Tree (Ensembl Compara modifications)☆21Oct 9, 2019Updated 6 years ago
- Manipulate genomic features and validate the syntax and reference sequence of your GFF3 files☆10Dec 26, 2022Updated 3 years ago
- Collection of SO Ontologies☆105Sep 10, 2025Updated 8 months ago
- De novo genome assembler.☆12Jul 30, 2018Updated 7 years ago
- Program for aligning DNA sequences, a pairwise aligner.☆250May 20, 2026Updated 2 weeks ago
- Consistent adapter and quality trimming for NGS, with extra functionality for RRBS data☆556Updated this week
- Specifications of SAM/BAM and related high-throughput sequencing file formats☆705Updated this week
- Transcript assembly and quantification for RNA-Seq☆513Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Graph-based alignment (Hierarchical Graph FM index)☆538Jan 27, 2026Updated 4 months ago
- BEDOPS: high-performance genomic feature operations☆369Apr 29, 2025Updated last year
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆275Mar 15, 2026Updated 2 months ago
- Tools to process and analyze deep sequencing data.☆761Jul 23, 2025Updated 10 months ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆870Apr 20, 2026Updated last month
- Quick Read Quality Control☆20Feb 28, 2023Updated 3 years ago
- Fast and accurate gene fusion detection from RNA-Seq data☆270Sep 21, 2025Updated 8 months ago
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆679Mar 20, 2026Updated 2 months ago
- Cutadapt removes adapter sequences from sequencing reads☆581Apr 6, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python programs for processing GFF3 files☆104Jun 1, 2026Updated last week
- A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.☆1,068Apr 25, 2026Updated last month
- This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.gith…☆870Updated this week
- Toolkit for processing sequences in FASTA/Q formats☆1,541Jun 1, 2025Updated last year
- Tools for working with SAM/BAM data☆610Dec 22, 2024Updated last year
- annotate a VCF with other VCFs/BEDs/tabixed files☆407May 1, 2026Updated last month
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,569Jun 1, 2026Updated last week
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,459May 20, 2026Updated 2 weeks ago
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆893May 22, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A quality control analysis tool for high throughput sequencing data☆601May 29, 2026Updated last week
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55May 17, 2022Updated 4 years ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆471Apr 21, 2026Updated last month
- This BLENDER has been sunsetted☆16Sep 27, 2024Updated last year
- TIDDIT - structural variant calling☆79Mar 22, 2026Updated 2 months ago
- The next version of bwa-mem☆837Oct 15, 2025Updated 7 months ago
- C++ API & command-line toolkit for working with BAM data☆430May 18, 2025Updated last year