GFF and GVF specification documents
☆220Jun 18, 2024Updated last year
Alternatives and similar repositories for Specifications
Users that are interested in Specifications are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GFF and GTF file manipulation and interconversion☆316Mar 31, 2026Updated 2 weeks ago
- GenomeTools genome analysis system.☆334Nov 10, 2025Updated 5 months ago
- Mummer alignment tool☆557Feb 4, 2025Updated last year
- bedtools - the swiss army knife for genome arithmetic☆1,028Mar 11, 2025Updated last year
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆473Apr 10, 2026Updated last week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆569Apr 13, 2026Updated last week
- TreeBeST: Tree Building guided by Species Tree (Ensembl Compara modifications)☆21Oct 9, 2019Updated 6 years ago
- Manipulate genomic features and validate the syntax and reference sequence of your GFF3 files☆10Dec 26, 2022Updated 3 years ago
- Collection of SO Ontologies☆103Sep 10, 2025Updated 7 months ago
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- Program for aligning DNA sequences, a pairwise aligner.☆243Mar 27, 2026Updated 3 weeks ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆546Updated this week
- Specifications of SAM/BAM and related high-throughput sequencing file formats☆703Mar 17, 2026Updated last month
- Transcript assembly and quantification for RNA-Seq☆502Dec 26, 2025Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Graph-based alignment (Hierarchical Graph FM index)☆532Jan 27, 2026Updated 2 months ago
- BEDOPS: high-performance genomic feature operations☆365Apr 29, 2025Updated 11 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆270Mar 15, 2026Updated last month
- Tools to process and analyze deep sequencing data.☆757Jul 23, 2025Updated 8 months ago
- Bayesian haplotype-based genetic polymorphism discovery and genotyping.☆865Feb 8, 2026Updated 2 months ago
- Quick Read Quality Control☆20Feb 28, 2023Updated 3 years ago
- Fast and accurate gene fusion detection from RNA-Seq data☆269Sep 21, 2025Updated 6 months ago
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆672Mar 20, 2026Updated last month
- Cutadapt removes adapter sequences from sequencing reads☆576Apr 6, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Python programs for processing GFF3 files☆104Dec 15, 2025Updated 4 months ago
- This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.gith…☆857Apr 7, 2026Updated 2 weeks ago
- A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.☆1,062Mar 24, 2026Updated 3 weeks ago
- Toolkit for processing sequences in FASTA/Q formats☆1,535Jun 1, 2025Updated 10 months ago
- Tools for working with SAM/BAM data☆609Dec 22, 2024Updated last year
- annotate a VCF with other VCFs/BEDs/tabixed files☆400Aug 30, 2025Updated 7 months ago
- A cross-platform and ultrafast toolkit for FASTA/Q file manipulation☆1,539Updated this week
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,441Apr 9, 2026Updated last week
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆887Apr 12, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A quality control analysis tool for high throughput sequencing data☆597Apr 13, 2026Updated last week
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55May 17, 2022Updated 3 years ago
- RSEM: accurate quantification of gene and isoform expression from RNA-Seq data☆470Apr 7, 2026Updated 2 weeks ago
- This BLENDER has been sunsetted☆16Sep 27, 2024Updated last year
- TIDDIT - structural variant calling☆79Mar 22, 2026Updated 3 weeks ago
- The next version of bwa-mem☆827Oct 15, 2025Updated 6 months ago
- Graphical Fragment Assembly (GFA) Format Specification☆220Aug 21, 2024Updated last year