Transformer based region discovery in spatial transcriptomics (but mostly MERFISH) datasets
☆18Mar 14, 2025Updated last year
Alternatives and similar repositories for celltransformer
Users that are interested in celltransformer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- fast hierarchical clustering for large-scale single-cell data☆11Jul 11, 2021Updated 5 years ago
- Standalone cellfinder cell detection algorithm☆20Jan 3, 2024Updated 2 years ago
- Bayesian structural time series in python☆13Mar 17, 2022Updated 4 years ago
- The ANTsX Ecosystem for Mapping the Mouse Brain☆24Dec 2, 2025Updated 7 months ago
- A repository containing the code accompanying the research paper "Neuronal travelling waves explain rotational dynamics in experimental d…☆26Feb 24, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Registration to BrainGlobe atlases in napari using Elastix☆29Updated this week
- Annotatability, a method to identify meaningful patterns in single-cell genomics data through annotation-trainability analysis, which est…☆19Jun 23, 2025Updated last year
- ☆15Updated this week
- ☆18Feb 10, 2022Updated 4 years ago
- ☆29Apr 13, 2026Updated 3 months ago
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆31Oct 13, 2023Updated 2 years ago
- End-to-end light-sheet image analysis for mouse brains, with DL training data generated in VR☆35Jan 2, 2026Updated 6 months ago
- Gene regulatory network inference for RNA velocity and pseudotime data☆29Nov 6, 2025Updated 8 months ago
- Interactive surface analysis in napari for bio-mechanical stress measurement☆18Jul 13, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- code related to Shirvalkar et al. 2023 - Nature Neuroscience☆10May 22, 2023Updated 3 years ago
- ☆46Jun 18, 2026Updated last month
- Blue Brain multi-modal registration and alignment toolbox☆12Feb 14, 2024Updated 2 years ago
- Simple Inkscape extension to convert nodes of paths to x,y coordinates☆14Mar 13, 2023Updated 3 years ago
- Python package for dimension reduction of high-dimensional biological data.☆16May 23, 2018Updated 8 years ago
- Code for Slow Transition to Low-Dimensional Chaos in Heavy-Tailed Recurrent Neural Networks (NeurIPS 2025)☆20Jul 9, 2026Updated last week
- Python package for Probe set selection for targeted spatial transcriptomics.☆51Nov 8, 2025Updated 8 months ago
- Collection of tools to handle Neuropixel 1.0 and 2.0 data☆19Updated this week
- ☆10Oct 15, 2025Updated 9 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- An annotation and instance segmentation-based multi-object tracking and behavior analysis package.☆57Jul 12, 2026Updated last week
- A Chrome/Safari Web Extension that allows to simultaneously submit a prompt to multiple AI chats☆18Nov 17, 2024Updated last year
- ☆12Mar 24, 2023Updated 3 years ago
- ☆62Feb 14, 2025Updated last year
- The known BioVoxxel Toolbox functions now improved for 2D and 3D images☆21Feb 10, 2026Updated 5 months ago
- How to use Aligning Big Brains and Atlases with Python☆14May 3, 2023Updated 3 years ago
- The analysis repository for the Open Pediatric Cancer Project☆27Jul 9, 2025Updated last year
- ☆11Nov 15, 2023Updated 2 years ago
- A Python package for unsupervised analysis of spatial (prote)omics data.☆17Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Napari plugin for vollseg☆14Jul 16, 2025Updated last year
- A simple example of VAEs with KANs☆12May 17, 2024Updated 2 years ago
- GENOT: Generative Neural Optimal Transport☆16Dec 18, 2024Updated last year
- Collection of probe description for probeinterface☆21Updated this week
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆60Jun 29, 2026Updated 3 weeks ago
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆20Nov 18, 2025Updated 8 months ago