WangLabTHU / deepseedLinks
☆31Updated last year
Alternatives and similar repositories for deepseed
Users that are interested in deepseed are comparing it to the libraries listed below
Sorting:
- A method to predict DNA shape features considering farther flanking region.☆36Updated 11 months ago
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆92Updated last month
- ☆70Updated 11 months ago
- ☆76Updated 2 months ago
- ☆78Updated 2 years ago
- ☆67Updated 6 months ago
- Associated code for EvoWeaver publication☆15Updated 4 months ago
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆15Updated 2 years ago
- iCodon customizes gene expression based on the codon composition☆15Updated last year
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆40Updated last week
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- ☆22Updated 3 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆119Updated last year
- Multi-class signal peptide prediction and structure decoding model.☆94Updated 7 months ago
- deep learning-inspired explainable sequence model for transcription initiation☆97Updated 6 months ago
- Deep learning embedding for nucleotide sequences☆19Updated 5 months ago
- Computational Optimization of DNA Activity (CODA)☆61Updated 5 months ago
- Genomic language model predicts protein co-regulation and function☆81Updated 6 months ago
- MSA(Multiple Sequence Alignment) visualization python package for sequence analysis☆151Updated 9 months ago
- HLA-II ligand predictor.☆44Updated 2 years ago
- G4Hunter (2012_2015)- IECB - Bordeaux☆16Updated 5 years ago
- ☆41Updated last month
- HLA-I ligand predictor☆43Updated 9 months ago
- Models, design algorithms, and other software related to Salis lab publications☆35Updated 10 months ago
- PDLLMs: A group of tailored DNA large language models (LLMs) for analyzing plant genomes☆37Updated 3 months ago
- Protein 3D structure prediction pipeline☆86Updated this week
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆23Updated last year
- Species-aware DNA language models capture regulatory elements and their evolution☆24Updated 2 years ago
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆49Updated last year