WangLabTHU / deepseed

Related projects ⓘ

Alternatives and complementary repositories for deepseed

• XWangLabTHU / NeuronMotif
  NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks
  ☆15Updated last year
• ntranoslab / esm-variants
  ☆66Updated last year
• Weeks-UNC / shapemapper2
  Public repository for ShapeMapper 2 releases
  ☆30Updated 9 months ago
• RTH-tools / crispron
  CRISPR Cas9 ontarget prediction software
  ☆25Updated last year
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆35Updated last week
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆46Updated 6 months ago
• Illumina / PrimateAI-3D
  ☆60Updated 3 months ago
• DC-Jade / bioinfo_pi_atlas
  ☆49Updated last year
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆32Updated last month
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆35Updated last year
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆30Updated 4 months ago
• lulab / OligoFormer
  ☆14Updated 3 weeks ago
• ohlerlab / PARpipe
  Complete analysis pipeline for PAR-CLIP data
  ☆10Updated 9 years ago
• bernardo-de-almeida / DeepSTARR
  Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…
  ☆54Updated last year
• AnimaTardeb / G4Hunter
  G4Hunter (2012_2015)- IECB - Bordeaux
  ☆12Updated 4 years ago
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆76Updated 2 years ago
• BackofenLab / RNAProt
  Modelling RBP binding preferences to predict RPB binding sites
  ☆11Updated last year
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆30Updated 2 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆83Updated 9 months ago
• RTH-tools / crisproff
  off-targeting assessment of Cas9 gRNAs
  ☆12Updated 3 years ago
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆33Updated 2 years ago
• weir12 / DeepEdit
  DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing
  ☆14Updated last year
• GfellerLab / MixTCRpred
  Predictor of TCR-epitope interactions
  ☆17Updated 2 months ago
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆60Updated 2 years ago
• xinyu-dev / igblast
  Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python
  ☆28Updated 2 years ago
• maxwshen / indelphi-dataprocessinganalysis
  Data Processing, Modeling and Analysis scripts for CRISPR-inDelphi
  ☆13Updated last year
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆83Updated 2 months ago
• EddyRivasLab / infernal
  RNA secondary structure/sequence profiles for homology search and alignment
  ☆100Updated 6 months ago
• zhuhr213 / HDRNet
  ☆10Updated 9 months ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆49Updated 4 years ago