☆34Mar 3, 2024Updated 2 years ago
Alternatives and similar repositories for deepseed
Users that are interested in deepseed are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GPro: a toolbox for Generative approaches in promoter design☆30Mar 8, 2024Updated 2 years ago
- ☆13Feb 22, 2022Updated 4 years ago
- DNA-D2S: a systematic error simulation Model for DNA Data Storage channel☆12Feb 14, 2022Updated 4 years ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated last year
- ☆13Jan 23, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Promoter activity measurement and modeling; artificial promoter design and testing☆13Mar 24, 2023Updated 3 years ago
- HIVID2 is a tool for detecting virus integration events in the host genome.☆12Oct 1, 2023Updated 2 years ago
- Deep neural network based prediction model for gene essentiality prediction in microbes☆10Feb 11, 2021Updated 5 years ago
- The official repository for the ARSENAL model☆19Jul 3, 2026Updated last month
- ☆21Feb 13, 2020Updated 6 years ago
- Downloader for ENCODE☆32Oct 5, 2020Updated 5 years ago
- ☆52Mar 22, 2026Updated 5 months ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆71Aug 10, 2021Updated 5 years ago
- ☆77Oct 19, 2024Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- NeuronMotif: deciphering cis-regulatory codes by layerwise demixing of deep neural networks☆16Jun 19, 2023Updated 3 years ago
- Pytorch implementation of DeePromoter Active sequence detection for promoter(DNA subsequence regulates transcription initiation of the ge…☆13Jul 8, 2021Updated 5 years ago
- PARM: Promoter Activity Regulatory Model☆26Jul 27, 2026Updated last month
- ☆13Apr 7, 2023Updated 3 years ago
- Functions for distance matrix objects in R.☆15Mar 9, 2026Updated 5 months ago
- Microbial Whole Genome Sequence data analysis labs for 2014☆29Jul 31, 2020Updated 6 years ago
- Provide RNA and DNA Foundation Model Benchmarks and Applications☆29Nov 26, 2025Updated 9 months ago
- Linear Mode Connectivity in Multitask and Continual Learning: https://arxiv.org/abs/2010.04495☆13Oct 12, 2020Updated 5 years ago
- ☆15Nov 25, 2019Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A 10x faster version base on official trimmomatic. The results of trimmomatic-pigz are exactly the same with official trimmomatic.☆16Nov 20, 2024Updated last year
- Machine-learning-based general bacterial promoter prediction tool.☆55Jun 19, 2023Updated 3 years ago
- A CNN based model to predict the efficacy of Cas12a sgRNAs in diagnostic scenarios.☆12Feb 29, 2024Updated 2 years ago
- ☆30May 15, 2023Updated 3 years ago
- Code accompanying the paper "Deciphering regulatory DNA sequences and noncoding genetic variants using neural network models of massively…☆13May 9, 2026Updated 3 months ago
- ☆11Aug 2, 2024Updated 2 years ago
- Repo for a Microbiome Protocol☆10Apr 26, 2018Updated 8 years ago
- Data Processing, Modeling and Analysis scripts for CRISPR-inDelphi☆15Apr 21, 2023Updated 3 years ago
- DeepSoluE☆18Sep 18, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- miRge - microRNA alignment software for small RNA-seq data, now at v2.0☆28Mar 23, 2022Updated 4 years ago
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- PyTorch implementation of Basenji2.☆22Apr 29, 2025Updated last year
- ☆11Jan 2, 2021Updated 5 years ago
- ☆71Mar 18, 2026Updated 5 months ago
- ☆36Jan 27, 2025Updated last year
- A fast dataloader for bigwig files made for machine learning☆29Dec 16, 2025Updated 8 months ago