nickFurlotte / pylmmView external linksLinks
A fast and lightweight python-based linear mixed-model solver for use in genome-wide association studies.
☆43Dec 14, 2015Updated 10 years ago
Alternatives and similar repositories for pylmm
Users that are interested in pylmm are comparing it to the libraries listed below
Sorting:
- Repo to analyze population genetic data with many different methods☆15Oct 23, 2019Updated 6 years ago
- Mixed Model Package For Genome-wide association mapping.☆17Mar 31, 2019Updated 6 years ago
- ☆34Mar 7, 2021Updated 4 years ago
- GridLMM package☆39Oct 16, 2025Updated 4 months ago
- Fast but inaccurate adapter trimmer for Illumina reads☆16Mar 17, 2022Updated 3 years ago
- ☆15Dec 18, 2024Updated last year
- RaMWAS: Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms☆10Sep 22, 2021Updated 4 years ago
- An R package for adaptive shrinkage☆87Jul 24, 2025Updated 6 months ago
- ☆24Dec 10, 2018Updated 7 years ago
- ☆11May 10, 2025Updated 9 months ago
- Neural Network of enhancer regions☆14Aug 23, 2019Updated 6 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Sep 17, 2020Updated 5 years ago
- locus R package - Large-scale variational inference for variable selection in sparse multiple-response regression☆10Jan 2, 2024Updated 2 years ago
- A pipeline for assemble chroloplast genome using short/long reads☆10Mar 31, 2022Updated 3 years ago
- This is a basic repository with all the scripts necessary to reconstruct the data analysis from our work on the 200 Genomes☆12Aug 31, 2018Updated 7 years ago
- Database-Integrated Genome Screening (DIGS) tool. Explore the dark genome using BLAST and a relational database.☆11Aug 25, 2024Updated last year
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 6 years ago
- ☆13May 16, 2016Updated 9 years ago
- TFFM framework☆13Sep 22, 2025Updated 4 months ago
- Liability Estimation for Case-Control Studies☆10Sep 26, 2020Updated 5 years ago
- Quantitative Trait Cluster Association Test in R☆26Apr 19, 2021Updated 4 years ago
- Lecture notes for Eric Anderson and Matthew Stephens SISG course on MCMC for Statistical Genetics☆30Jul 23, 2021Updated 4 years ago
- RSS: Regression with Summary Statistics☆51Sep 16, 2024Updated last year
- Framework for efficient high-dimensional association analyses.☆18Updated this week
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11May 5, 2020Updated 5 years ago
- intro to programming for IE2 evolution students☆12Jan 31, 2024Updated 2 years ago
- Pipeline to perform the allele-specific expression analysis (based on the work by Skelly et al. 2011)☆12May 22, 2025Updated 8 months ago
- Converts p-values in q-values, see (Storey and Tibshirani, 2003)☆29May 22, 2017Updated 8 years ago
- Modeling and Analysis of (Statistical) Genetics data in python☆16Jun 12, 2025Updated 8 months ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆19Nov 29, 2022Updated 3 years ago
- Pipeline for poreathon☆14Dec 17, 2014Updated 11 years ago
- Library and command line scripts for fitting heteroskedastic linear mixed models to genetic data. Can be used to perform GWAS for genetic…☆18Sep 13, 2018Updated 7 years ago
- Code for "Gene-Gene Interaction Detection with Deep Learning"☆13Oct 26, 2022Updated 3 years ago
- SMTpred is a program which combines SNP effects or individual scores from multiple traits according to their sample size, SNP-heritabilit…☆15May 25, 2017Updated 8 years ago
- ☆18Oct 4, 2023Updated 2 years ago
- Utilities for analyzing next generation sequencing data.☆15May 7, 2021Updated 4 years ago
- Scripts for population genetics analysis☆20Nov 10, 2022Updated 3 years ago
- ☆14Nov 17, 2025Updated 2 months ago
- A pipeline for the computational evaluation of RNA-Seq data☆40Sep 10, 2024Updated last year