nickFurlotte / pylmmLinks
A fast and lightweight python-based linear mixed-model solver for use in genome-wide association studies.
☆43Updated 9 years ago
Alternatives and similar repositories for pylmm
Users that are interested in pylmm are comparing it to the libraries listed below
Sorting:
- Linear mixed model for genomic analyses.☆106Updated 4 years ago
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Updated 2 years ago
- ☆27Updated 4 months ago
- Companion repo for ExAC paper, 2015☆33Updated 9 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- Functional genomics and genome-wide association studies☆67Updated 7 years ago
- TeraStructure is a new algorithm to fit Bayesian models of genetic variation in human populations on tera-sample-sized data sets (10^12 o…☆48Updated 5 years ago
- Clustering cells from single cell RNA seq assays☆46Updated 6 years ago
- Bioconductor package "polyester", devel version. RNA-seq read simulator.☆93Updated 4 years ago
- Normalization for single cell RNA-seq data☆49Updated 4 months ago
- An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.☆64Updated 8 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Battenberg algorithm and associated implementation script☆53Updated 4 years ago
- Tools for processing UMI RNA-tag data☆131Updated 2 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated 2 months ago
- Sanity check Variant Call Format (VCF) files.☆37Updated 9 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Differential Count Data Analysis Toolbox☆61Updated last year
- ☆33Updated 4 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆70Updated 4 years ago
- MOODS: Motif Occurrence Detection Suite☆106Updated 2 years ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- ☆84Updated 4 years ago
- ☆35Updated 9 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 3 years ago
- Rapid Mapping-based Isoform Quantification from RNA-Seq Reads☆127Updated 3 years ago
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- Transcript quantification import for modular pipelines☆141Updated 2 weeks ago
- An R package for import, QC and analysis of Illumina Infinium genotyping arrays☆35Updated 7 years ago