A fast and lightweight python-based linear mixed-model solver for use in genome-wide association studies.
☆43Dec 14, 2015Updated 10 years ago
Alternatives and similar repositories for pylmm
Users that are interested in pylmm are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GridLMM package☆39Oct 16, 2025Updated 6 months ago
- RaMWAS: Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms☆10Sep 22, 2021Updated 4 years ago
- Discrete Exterior Calculus☆13Jul 23, 2014Updated 11 years ago
- locus R package - Large-scale variational inference for variable selection in sparse multiple-response regression☆10Jan 2, 2024Updated 2 years ago
- An R package for adaptive shrinkage☆88May 4, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆34Mar 7, 2021Updated 5 years ago
- Scripts for generating integrated dataset from publically available data sources to evaluate known genetic associations evidence of varyi…☆11May 5, 2020Updated 6 years ago
- RSS: Regression with Summary Statistics☆51Sep 16, 2024Updated last year
- Statistical mixed effects models in Ruby☆21Jul 8, 2016Updated 9 years ago
- ☆24Dec 10, 2018Updated 7 years ago
- Python module to read binary Plink files.☆17Mar 25, 2026Updated last month
- SMTpred is a program which combines SNP effects or individual scores from multiple traits according to their sample size, SNP-heritabilit…☆15May 25, 2017Updated 8 years ago
- Repo to analyze population genetic data with many different methods☆15Oct 23, 2019Updated 6 years ago
- Fast but inaccurate adapter trimmer for Illumina reads☆16Mar 17, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- PredictDB Pipeline for GTEx v7 data☆18Nov 9, 2022Updated 3 years ago
- Library and command line scripts for fitting heteroskedastic linear mixed models to genetic data. Can be used to perform GWAS for genetic…☆19Sep 13, 2018Updated 7 years ago
- VCF parser using the Python pandas library☆27Feb 6, 2022Updated 4 years ago
- TFFM framework☆13Sep 22, 2025Updated 7 months ago
- Liability Estimation for Case-Control Studies☆10Sep 26, 2020Updated 5 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Aug 19, 2017Updated 8 years ago
- phy-mer☆11Oct 12, 2017Updated 8 years ago
- ☆11Apr 25, 2026Updated 2 weeks ago
- LASSO for GWAS with summary statistics☆79Sep 24, 2020Updated 5 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Converts p-values in q-values, see (Storey and Tibshirani, 2003)☆29May 22, 2017Updated 8 years ago
- ☆103Jun 26, 2022Updated 3 years ago
- ☆18Oct 4, 2023Updated 2 years ago
- Database-Integrated Genome Screening (DIGS) tool. Explore the dark genome using BLAST and a relational database.☆11Aug 25, 2024Updated last year
- ☆24May 15, 2019Updated 6 years ago
- We have moved to https://github.com/limix/limix.☆23Aug 29, 2017Updated 8 years ago
- Resources (software, data, research article) in the field of statistical genetics☆41Jun 19, 2023Updated 2 years ago
- iDeepV: predicting RBP binding sites using vector representation learned from sequences with a CNN.☆10Jul 16, 2019Updated 6 years ago
- R package for 'Bayesian multivariate analysis of summary statistics' (Stephens Lab)☆10Sep 17, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Quantitative Trait Cluster Association Test in R☆26Apr 19, 2021Updated 5 years ago
- Multivariate adaptive shrinkage methods used for analysis GTEx data in Urbut et al (2017).☆12Sep 25, 2017Updated 8 years ago
- Processing WGS aDNA data using the ReichLab protocol☆13Mar 8, 2019Updated 7 years ago
- Modeling and Analysis of (Statistical) Genetics data in python☆18Jun 12, 2025Updated 10 months ago
- Haplotype phasing software☆70Dec 5, 2020Updated 5 years ago
- Variational Inference of Polygenic Risk Scores☆30Apr 22, 2025Updated last year
- Learn and validate subtypes from multiple traits☆20Jun 15, 2021Updated 4 years ago