konstantint / pyliftover
Pure-python implementation of UCSC liftOver genome coordinate conversion
☆95Updated last year
Alternatives and similar repositories for pyliftover:
Users that are interested in pyliftover are comparing it to the libraries listed below
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆80Updated 5 months ago
- liftover for python, made fast with cython☆88Updated 5 months ago
- phasing and Allele Specific Expression from RNA-seq☆114Updated 9 months ago
- A tool for bigWig files.☆119Updated 6 years ago
- AQUAS TF and histone ChIP-seq pipeline☆108Updated 2 years ago
- ABRA2☆92Updated 2 years ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆103Updated 4 years ago
- Very simple, pure python, BAM file reader☆79Updated 6 years ago
- Relevant papers for CNV and SV approaches☆94Updated 6 months ago
- Publication quality NGS track plotting☆111Updated 2 years ago
- Battenberg algorithm and associated implementation script☆52Updated 4 years ago
- Workflows for converting between sequence data formats☆38Updated 3 years ago
- nucleosome calling using ATAC-seq☆106Updated 4 years ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- Detection of copy number changes in Germline/Trio/Somatic contexts in NGS data☆85Updated 3 months ago
- Finder of Somatic Fusion Genes in RNA-seq data☆145Updated 2 years ago
- Tools to work with GWAS-VCF summary statistics files☆118Updated 7 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 2 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆98Updated 2 years ago
- Reference data: BED files, genes, transcripts, variations.☆83Updated 7 years ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆170Updated 10 months ago
- Script to automatically create and run IGV snapshot batchscripts☆141Updated 2 years ago
- STAR based ENCODE Long RNA-Seq processing pipeline☆94Updated 4 years ago
- xHLA: Fast and accurate HLA typing from short read sequence data☆109Updated last year
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆78Updated 5 years ago
- ☆68Updated last year
- ☆72Updated 2 weeks ago
- A tool for profiling long STRs from short reads☆97Updated 4 years ago
- Bayesian genotyper for structural variants☆131Updated 4 years ago
- Software program for checking sample matching for NGS data☆130Updated 10 months ago