konstantint / pyliftover
Pure-python implementation of UCSC liftOver genome coordinate conversion
☆91Updated 9 months ago
Related projects ⓘ
Alternatives and complementary repositories for pyliftover
- liftover for python, made fast with cython☆77Updated 2 months ago
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆74Updated 3 weeks ago
- ABRA2☆90Updated last year
- Simple FASTQ quality assessment using Python☆109Updated 3 years ago
- VarDict☆187Updated 10 months ago
- Very simple, pure python, BAM file reader☆79Updated 5 years ago
- nucleosome calling using ATAC-seq☆106Updated 3 years ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- A tool for bigWig files.☆118Updated 6 years ago
- Platypus Variant Caller☆105Updated 4 months ago
- Microassembly based somatic variant caller for NGS data☆153Updated 2 years ago
- WASP: allele-specific pipeline for unbiased read mapping and molecular QTL discovery☆103Updated 3 years ago
- Python biomart API☆63Updated last year
- Tip and tricks for BAM files☆82Updated 6 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆77Updated 8 months ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆143Updated 2 months ago
- Read visualizer for structural variants☆81Updated 6 years ago
- phasing and Allele Specific Expression from RNA-seq☆110Updated 3 months ago
- An efficient FASTQ manipulation suite☆136Updated 4 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆122Updated 4 years ago
- A (mostly) universal methylation extractor for BS-seq experiments.☆162Updated 4 months ago
- ☆81Updated 5 years ago
- Documentation and description of AWS iGenomes S3 resource.☆107Updated 4 years ago
- ☆111Updated this week
- python access to UCSC genomes database☆134Updated 4 years ago
- Analysis pipeline for the GUIDE-seq assay.☆77Updated last year
- Bayesian genotyper for structural variants☆126Updated 3 years ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆232Updated 3 weeks ago
- Relevant papers for CNV and SV approaches☆94Updated this week
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆71Updated this week