Pure-python implementation of UCSC liftOver genome coordinate conversion
☆107Feb 8, 2024Updated 2 years ago
Alternatives and similar repositories for pyliftover
Users that are interested in pyliftover are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of commonly used formats for quick lookup.☆14Aug 3, 2026Updated 2 months ago
- liftover for python, made fast with cython☆101Oct 3, 2026Updated 3 weeks ago
- Robust individual and aggregate checksums for nucleotide sequences☆18Mar 3, 2026Updated 7 months ago
- A python extension for quick access to bigWig and bigBed files☆252Oct 11, 2026Updated 2 weeks ago
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆330Aug 26, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆410Updated this week
- Performant Pythonic GenomicRanges☆492Updated this week
- cython + htslib == fast VCF and BCF processing☆451Sep 10, 2026Updated last month
- HGVS variant description extractor☆11Apr 13, 2026Updated 6 months ago
- Tools for handling HiC and 5C data☆24Feb 5, 2024Updated 2 years ago
- Lifterover copy number segments in whole☆25Feb 6, 2024Updated 2 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- LDlink is a suite of web-based applications designed to easily and efficiently interrogate linkage disequilibrium in population groups. E…☆25Oct 15, 2026Updated 2 weeks ago
- Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.☆25Sep 4, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆911Updated this week
- A method to detect polygenic adaptation in an admixture graph☆12Feb 22, 2018Updated 8 years ago
- BFAST: the Blat-like Fast Accurate Search Tool☆12Jan 29, 2022Updated 4 years ago
- Scalable genetics toolkit☆285Updated this week
- genes and genomes at your fingertips☆410Jun 9, 2026Updated 4 months ago
- The python binding for D4 format☆16Oct 22, 2021Updated 5 years ago
- A Python package for exploring and analysing genetic variation data☆317Oct 1, 2026Updated 3 weeks ago
- ☆20Nov 30, 2023Updated 2 years ago
- probability of mendelian error in trios.☆11Jan 27, 2016Updated 10 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data☆85Aug 25, 2020Updated 6 years ago
- Efficient pythonic random access to fasta subsequences☆489Updated this week
- A fast python class for reading 2-bit files (used by UCSC genome browser)☆14Aug 16, 2026Updated 2 months ago
- Fast and memory-efficient sequencing error corrector☆96Jan 4, 2026Updated 9 months ago
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆16Dec 26, 2021Updated 4 years ago
- Genome inference from a population reference graph☆96Apr 1, 2025Updated last year
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆25Updated this week
- Blazing fast toolkit to work with .hic and .cool files☆49Updated this week
- Genomic interval operations on Pandas DataFrames☆196Oct 5, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Code to create a PRG from a Multiple Sequence Alignment file☆26Sep 10, 2025Updated last year
- DEPRECATED Lightweight bioinformatics pipeline tools using iPython☆14Dec 11, 2015Updated 10 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Oct 14, 2026Updated 2 weeks ago
- Very simple and configurable all-in-one dotplot program☆14Apr 1, 2023Updated 3 years ago
- a wee tool for random access into BGZF files.☆86May 10, 2018Updated 8 years ago
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆11Feb 6, 2025Updated last year
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Jan 18, 2016Updated 10 years ago