Alternatives and similar repositories for pyliftover

Users that are interested in pyliftover are comparing it to the libraries listed below

• jeremymcrae / liftover
  liftover for python, made fast with cython
  ☆89Updated 3 months ago
• openvax / gtfparse
  Parsing tools for GTF (gene transfer format) files
  ☆121Updated 6 months ago
• JohnLonginotto / pybam
  Very simple, pure python, BAM file reader
  ☆79Updated 6 years ago
• mdshw5 / fastqp
  Simple FASTQ quality assessment using Python
  ☆109Updated 4 years ago
• g2nb / igv-jupyter
  Extension for Jupyter which integrates igv.js
  ☆154Updated 2 years ago
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆85Updated 3 months ago
• skrakau / PureCLIP
  Capturing protein-RNA interaction footprints from single-nucleotide CLIP-seq data
  ☆32Updated 4 years ago
• betteridiot / bamnostic
  a pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool
  ☆98Updated 2 months ago
• bxlab / bx-python
  Tools for manipulating biological data, particularly multiple sequence alignments
  ☆158Updated last month
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆56Updated 5 years ago
• 4dn-dcic / hic2cool
  Lightweight converter between hic and cool contact matrices.
  ☆74Updated last year
• sebriois / biomart
  Python biomart API
  ☆68Updated 2 years ago
• phageghost / python-genome-browser
  Tools for making plots of genomic datasets in a genome-browser-like format
  ☆32Updated 8 months ago
• 3DGenomes / TADbit
  TADbit is a complete Python library to deal with all steps to analyze, model and explore 3C-based data. With TADbit the user can map FAST…
  ☆105Updated 3 months ago
• simon-anders / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆125Updated 5 years ago
• vanheeringen-lab / gimmemotifs
  Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…
  ☆120Updated last year
• griffithlab / regtools
  Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.
  ☆131Updated last year
• maximilianh / crisporWebsite
  All source code of the crispor.org website
  ☆79Updated 7 months ago
• dpryan79 / libBigWig
  A C library for handling bigWig files
  ☆81Updated 7 months ago
• andyrimmer / Platypus
  Platypus Variant Caller
  ☆108Updated last year
• igvteam / igv-notebook
  Module for embedding igv.js in an IPython notebook
  ☆78Updated 6 months ago
• BUStools / bustools
  Tools for working with BUS files
  ☆101Updated 3 months ago
• sequana / sequana
  Sequana: a set of Snakemake NGS pipelines
  ☆146Updated last month
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆86Updated 7 years ago
• open2c / pairtools
  Extract 3D contacts (.pairs) from sequencing alignments
  ☆115Updated last week
• bgruening / galaxy-rna-workbench
  Galaxy RNA workbench
  ☆40Updated 4 years ago
• aryeelab / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆78Updated 2 years ago
• jhkorhonen / MOODS
  MOODS: Motif Occurrence Detection Suite
  ☆106Updated 2 years ago
• liguowang / CrossMap
  CrossMap is a python program to lift over genome coordinates from one genome version to another.
  ☆85Updated 2 months ago
• open2c / distiller-nf
  A modular Hi-C mapping pipeline
  ☆98Updated 8 months ago