konstantint / pyliftover
Pure-python implementation of UCSC liftOver genome coordinate conversion
☆92Updated last year
Alternatives and similar repositories for pyliftover:
Users that are interested in pyliftover are comparing it to the libraries listed below
- liftover for python, made fast with cython☆86Updated 2 months ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆76Updated 2 months ago
- ABRA2☆92Updated 2 years ago
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated 2 weeks ago
- VarDict☆192Updated last year
- phasing and Allele Specific Expression from RNA-seq☆111Updated 7 months ago
- Somatic and germline variant caller for amplicon data. Recommended caller for tumor-only workflows.☆96Updated 2 years ago
- Relevant papers for CNV and SV approaches☆94Updated 3 months ago
- tools for adding mutations to existing .bam files, used for testing mutation callers☆237Updated 3 months ago
- Bayesian genotyper for structural variants☆127Updated 3 years ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆156Updated last year
- A (mostly) universal methylation extractor for BS-seq experiments.☆168Updated 7 months ago
- A structural variation pipeline for short-read sequencing☆178Updated this week
- ☆82Updated 6 years ago
- Platypus Variant Caller☆108Updated 7 months ago
- Precision HLA typing from next-generation sequencing data☆195Updated 11 months ago
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆80Updated last week
- This repository contains information about latest release from Genome in a Bottle project☆73Updated 5 years ago
- Read visualizer for structural variants☆81Updated 6 years ago
- Tools to work with GWAS-VCF summary statistics files☆114Updated 4 months ago
- Scallop is a reference-based transcriptome assembler for RNA-seq☆89Updated 3 years ago
- Very simple, pure python, BAM file reader☆79Updated 5 years ago
- Microassembly based somatic variant caller for NGS data☆154Updated 2 years ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome☆147Updated 5 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆79Updated this week
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 4 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆157Updated 5 months ago
- A tool for bigWig files.☆119Updated 6 years ago
- TransVar - multiway annotator for precision medicine☆122Updated last year