Pure-python implementation of UCSC liftOver genome coordinate conversion
☆103Feb 8, 2024Updated 2 years ago
Alternatives and similar repositories for pyliftover
Users that are interested in pyliftover are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- liftover for python, made fast with cython☆99Apr 18, 2026Updated 2 months ago
- A collection of commonly used formats for quick lookup.☆14Mar 26, 2026Updated 3 months ago
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")☆330Mar 16, 2025Updated last year
- LDlink is a suite of web-based applications designed to easily and efficiently interrogate linkage disequilibrium in population groups. E…☆25Jul 2, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Robust individual and aggregate checksums for nucleotide sequences☆17Mar 3, 2026Updated 4 months ago
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆402Updated this week
- Partitioning algorithm developed for LAVA☆17May 17, 2024Updated 2 years ago
- Lifterover copy number segments in whole☆25Feb 6, 2024Updated 2 years ago
- Performant Pythonic GenomicRanges☆494Apr 23, 2026Updated 2 months ago
- cython + htslib == fast VCF and BCF processing☆446Jun 25, 2026Updated last week
- Data and the co-authored network I extracted for lab selection in 3D genome research field☆16Dec 26, 2021Updated 4 years ago
- Lightweight, portable variation registration and retrieval☆16Updated this week
- HGVS variant description extractor☆11Apr 13, 2026Updated 2 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Blazing fast toolkit to work with .hic and .cool files☆45Jun 29, 2026Updated last week
- Python bindings to UCSC BigWig and BigBed library☆36Jun 22, 2026Updated 2 weeks ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- Compare assembly graph file formats☆16Jul 23, 2015Updated 10 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Updated this week
- Tools for handling HiC and 5C data☆24Feb 5, 2024Updated 2 years ago
- A python extension for quick access to bigWig and bigBed files☆246Jan 14, 2026Updated 5 months ago
- provides common tools and lookup tables used primarily by the hgvs and uta packages☆25Jan 12, 2026Updated 5 months ago
- Expectation-Maximization algorithm for Allele-Specific Expression☆22May 9, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Pysam is a Python package for reading, manipulating, and writing genomics data such as SAM/BAM/CRAM and VCF/BCF files. It's a lightweight…☆897Jun 23, 2026Updated 2 weeks ago
- dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organ…☆21Jan 20, 2025Updated last year
- A Python package for exploring and analysing genetic variation data☆316Jul 1, 2026Updated last week
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- ☆20Nov 30, 2023Updated 2 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Sep 18, 2025Updated 9 months ago
- Library for visualising genomic features in Python.☆16May 12, 2017Updated 9 years ago
- Kmer based genotyper for short reads.☆23Oct 19, 2021Updated 4 years ago
- genes and genomes at your fingertips☆412Jun 9, 2026Updated last month
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆22Apr 14, 2019Updated 7 years ago
- Python library to parse, format, validate, normalize, and map sequence variants according to HGVS Nomenclature (https://hgvs-nomenclature…☆291Jun 29, 2026Updated last week
- A library to analyse the structure of 1d loops and simulate loop extrusion by loop extruding factors.☆11Feb 10, 2025Updated last year
- Automated optimisation of de-novo transcriptome assembly☆25Nov 11, 2015Updated 10 years ago
- Bam to Pandas DataFrame, quickly☆13May 10, 2025Updated last year
- A Python package for fast operations on 1-dimensional genomic signal tracks☆23Apr 3, 2020Updated 6 years ago
- Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; a…☆72Jun 27, 2026Updated last week