CshlSiepelLab / LINSIGHTLinks
☆26Updated last month
Alternatives and similar repositories for LINSIGHT
Users that are interested in LINSIGHT are comparing it to the libraries listed below
Sorting:
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated this week
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 4 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- ☆40Updated 7 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 6 years ago
- gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (…☆33Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 3 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- RNA-seq workflow: differential transcript usage☆22Updated last year
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- ☆78Updated 11 years ago
- Genomic Association Tester☆31Updated 2 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- A software for calculating telomere length☆70Updated 6 years ago
- Battenberg algorithm and associated implementation script☆53Updated 4 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- Tutorials covering various topics in genomic data analysis.☆17Updated 6 years ago
- A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.☆27Updated 8 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Detecting intron retention from RNA-Seq experiments☆55Updated last year
- Functional genomics and genome-wide association studies☆67Updated 6 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- ☆69Updated 2 years ago