CshlSiepelLab / LINSIGHTLinks
☆25Updated 3 weeks ago
Alternatives and similar repositories for LINSIGHT
Users that are interested in LINSIGHT are comparing it to the libraries listed below
Sorting:
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Genomic Association Tester☆31Updated 2 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- ☆40Updated 7 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated 3 weeks ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 6 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆34Updated 8 years ago
- GTEx analysis scripts☆20Updated 8 years ago
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 3 years ago
- ☆13Updated 7 years ago
- IDR☆31Updated 2 years ago
- A tool to plot significant regions of GWAS☆29Updated 2 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- Personal diploid genome creation and coordinate conversion☆29Updated 2 months ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated 2 years ago
- ☆22Updated 6 months ago
- RNA-seq workflow: differential transcript usage☆21Updated last year
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Enhanced version of the FastQTL QTL mapper☆66Updated 2 years ago
- Integrated copy number variation detection toolset☆26Updated 5 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 9 years ago