CshlSiepelLab / LINSIGHTLinks
☆26Updated 3 months ago
Alternatives and similar repositories for LINSIGHT
Users that are interested in LINSIGHT are comparing it to the libraries listed below
Sorting:
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆54Updated last month
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- ☆40Updated 7 years ago
- Genomic Association Tester☆32Updated 2 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Burden testing against public controls☆50Updated last year
- (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER☆31Updated 6 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆36Updated 3 years ago
- Create regional association plots from GWAS or meta-analysis☆61Updated 5 years ago
- Enhanced version of the FastQTL QTL mapper☆68Updated 2 years ago
- combining p-values using modified stouffer-liptak for spatially correlated results (probes)☆46Updated 3 years ago
- Functional genomics and genome-wide association studies☆67Updated 7 years ago
- IDR☆31Updated 2 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago
- A pipeline for analyzing DNA methylation data from bisulfite sequencing.☆70Updated 2 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆51Updated 3 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- Report reverse and ambiguous strand SNPs in GWAS data☆33Updated 6 years ago
- A complete tool set for molecular QTL discovery and analysis☆57Updated last year
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 3 years ago
- ☆72Updated 2 years ago
- QDNAseq package for Bioconductor☆51Updated last year
- Mapped QC analysis program☆44Updated 7 years ago
- A comprehensive toolkit for mutational signature analysis☆41Updated last year
- A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.☆27Updated 8 years ago
- ☆38Updated 4 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆39Updated 4 years ago