Workflows used for WGS data processing -- replaced by https://github.com/gatk-workflows/gatk4-genome-processing-pipeline
☆57Jan 24, 2020Updated 6 years ago
Alternatives and similar repositories for five-dollar-genome-analysis-pipeline
Users that are interested in five-dollar-genome-analysis-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆59Mar 19, 2020Updated 6 years ago
- Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools☆163Aug 10, 2022Updated 4 years ago
- ☆13May 2, 2018Updated 8 years ago
- Pipeline in place at the UGI for DNA level analysis☆12Aug 29, 2016Updated 10 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Feb 12, 2022Updated 4 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensemb…☆10May 7, 2017Updated 9 years ago
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆79Mar 9, 2020Updated 6 years ago
- Workflows for germline short variant discovery with GATK4☆145May 7, 2021Updated 5 years ago
- Variant Calling Pipeline in Cromwell/WDL☆22Feb 22, 2020Updated 6 years ago
- Killifish genomics scripts☆12Feb 19, 2021Updated 5 years ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 9 years ago
- TOPMed analysis pipeline☆52Oct 10, 2023Updated 2 years ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆38Jun 19, 2020Updated 6 years ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- Fast manhattenplots using ggplot2☆14Apr 24, 2026Updated 4 months ago
- Whole Genome Sequenceing Structural Variation Pipelines☆18Apr 4, 2019Updated 7 years ago
- Bioinformatics scripts☆14Dec 23, 2024Updated last year
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Mar 4, 2019Updated 7 years ago
- Open workflow definitions for genomic analysis from MGI at WUSM.☆107Jun 23, 2025Updated last year
- ☆12Dec 8, 2021Updated 4 years ago
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 8 months ago
- create a gemini-compatible database from a VCF☆55Jan 5, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆64Sep 21, 2016Updated 9 years ago
- Obsolete/Legacy GATK repository -- go to https://github.com/broadinstitute/gatk instead☆32Aug 16, 2017Updated 9 years ago
- This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…☆22Mar 9, 2020Updated 6 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15May 22, 2019Updated 7 years ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 7 years ago
- Scripts and code for Kākāpō genomic data☆14Sep 4, 2023Updated 3 years ago
- De novo lncRNA discovery pipeline, re-write of PLAR in shell and awk☆10Aug 2, 2023Updated 3 years ago
- A simple variant calling and annotation pipeline using BWA, GATK and ENSEMBL. This version of the pipeline uses the Rubra/Ruffus framewor…☆33Mar 18, 2014Updated 12 years ago
- A tool to detect postzygotic single-nucleotide mosaicism from unpaired, trio, or paired samples.☆13Feb 23, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility☆18Aug 5, 2021Updated 5 years ago
- 1000 Genomes Project population visualizations using dimensionality reduction☆11Dec 8, 2022Updated 3 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Jun 28, 2018Updated 8 years ago
- A scala based DSL and framework for writing and executing bioinformatics pipelines as Directed Acyclic GRaphs☆70May 27, 2022Updated 4 years ago
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 6 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆18Mar 10, 2018Updated 8 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Dec 8, 2020Updated 5 years ago