broadinstitute / VariantBamLinks
Filtering and profiling of next-generational sequencing data using region-specific rules
☆25Updated 9 years ago
Alternatives and similar repositories for VariantBam
Users that are interested in VariantBam are comparing it to the libraries listed below
Sorting:
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- ☆51Updated 6 years ago
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Pipeline for structural variation detection in cohorts☆52Updated 4 years ago
- ☆35Updated 4 years ago
- Indel caller for DNA-seq or RNA-seq☆16Updated 2 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆31Updated 4 months ago
- GEM-Mapper v3☆58Updated last month
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆38Updated 5 years ago
- Immuological gene typing and annotation for genome assembly☆38Updated 9 months ago
- ☆24Updated last year
- Long-read splice alignment with high accuracy☆64Updated last year
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 6 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 3 months ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- Tools to process LIANTI sequence data☆23Updated 6 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆35Updated 2 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 6 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago