Filtering and profiling of next-generational sequencing data using region-specific rules
☆25May 17, 2016Updated 9 years ago
Alternatives and similar repositories for VariantBam
Users that are interested in VariantBam are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Oct 30, 2023Updated 2 years ago
- Codes to regenerate figures for mutagen paper☆12Apr 8, 2021Updated 5 years ago
- A Java package for non-invasive cancer diagnosis using methylation profiles of cell-Free DNA.☆16Apr 2, 2019Updated 7 years ago
- A pan-cancer genome-wide analysis reveals tumour dependencies by induction of nonsense-mediated decay☆15Nov 2, 2020Updated 5 years ago
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆28May 23, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A platform for matching patient-specific genomic profiles to precision cancer medicine clinical trials☆20Dec 5, 2023Updated 2 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Oct 6, 2020Updated 5 years ago
- Variant caller GUI + genetic disease analysis☆22Apr 29, 2020Updated 5 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Mar 30, 2021Updated 5 years ago
- ☆10Mar 11, 2026Updated last month
- ☆16Apr 29, 2024Updated last year
- iCAGES (integrated CAncer GEnome Score) is an effective tool for prioritizing cancer driver genes for a patient☆14Aug 18, 2022Updated 3 years ago
- Alerts for Western Australian Covid-19 exposure locations via email, slack, and discord.☆11Mar 29, 2022Updated 4 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Jan 4, 2018Updated 8 years ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆18Mar 24, 2026Updated 3 weeks ago
- Call regions of homozygosity and make tentative UPD calls☆12Jun 27, 2025Updated 9 months ago
- A gene fusion caller for long-read transcriptome sequencing data.☆22Apr 29, 2024Updated last year
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated last year
- A tool for sample swap identification in high throughput sequencing studies☆10Mar 4, 2025Updated last year
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- Barcoded Molecular Families☆22Nov 20, 2017Updated 8 years ago
- TNER: Tri-Nucleotide Error Reducer for ctDNA detection☆21Aug 23, 2019Updated 6 years ago
- BAM Statistics, Feature Counting and Annotation☆154Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆25Jan 18, 2022Updated 4 years ago
- Tools for analyzing 10X Genomics data☆42Feb 6, 2019Updated 7 years ago
- ☆29Sep 4, 2023Updated 2 years ago
- Transposable Elements MOvement detection using LOng reads☆25Mar 31, 2026Updated 2 weeks ago
- Scrooge is a high-performance pairwise sequence aligner based on the GenASM algorithm. Scrooge includes three novel algorithmic improveme…☆38Jun 23, 2023Updated 2 years ago
- ☆16May 23, 2022Updated 3 years ago
- JTK -- a regional diploid genome assembler☆26Oct 20, 2024Updated last year
- Parse samtools pileup file to get how many bases and what kind of bases are called☆14Apr 30, 2024Updated last year
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆70Aug 30, 2022Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Links to data science, bioinformatics, statistics, and machine learning resources☆18Aug 20, 2020Updated 5 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Apr 4, 2022Updated 4 years ago
- Documentation and configuration files for deploying the Knowledge Systems Group's services using kubernetes☆13Updated this week
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- ☆85Apr 17, 2025Updated 11 months ago
- Inferring selection in cancer sequencing data using ABC and population based simulations☆12Jan 31, 2021Updated 5 years ago
- Deep learning-based structural variant filtering method☆39Nov 19, 2023Updated 2 years ago