broadinstitute / VariantBamLinks
Filtering and profiling of next-generational sequencing data using region-specific rules
☆25Updated 9 years ago
Alternatives and similar repositories for VariantBam
Users that are interested in VariantBam are comparing it to the libraries listed below
Sorting:
- Structural Variant Prediction Viewer☆35Updated 8 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- Support Vector Structural Variation Genotyper☆58Updated 5 years ago
- heuristics to merge structural variant calls in VCF format.☆36Updated 8 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- Indel caller for DNA-seq or RNA-seq☆14Updated 2 years ago
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- ☆51Updated 5 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 8 years ago
- Genome-wide reconstruction of complex structural variants☆39Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆78Updated last year
- ☆35Updated 4 years ago
- GEM-Mapper v3☆58Updated 4 months ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- processing 10x genomics reads☆26Updated 5 years ago
- Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)☆36Updated 5 years ago
- ☆39Updated last year
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- Read visualizer for structural variants☆84Updated 6 years ago
- SQANTI2 is now replaced by SQANTI3. Please go to: https://github.com/ConesaLab/SQANTI3☆38Updated 5 years ago