Ajaxels / MIB2Links
Microscopy Image Browser version 2 is a package for image processing, segmentation and visualization of multi-dimensional (2D-4D) microscopy datasets
☆35Updated last month
Alternatives and similar repositories for MIB2
Users that are interested in MIB2 are comparing it to the libraries listed below
Sorting:
- ImgLib2/BDV implementation of Stitching for large datasets☆77Updated 2 weeks ago
- Lattice light-sheet post-processing utility.☆30Updated 2 weeks ago
- ☆21Updated 4 years ago
- ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.☆45Updated this week
- A BaSiC Tool for Background and Shading Correction of Optical Microscopy Images☆64Updated 8 months ago
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 4 months ago
- Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy☆70Updated 2 weeks ago
- High-Resolution, Large Field-of-View, and Multi-ViewSingle Objective Light-Sheet Microscopy☆29Updated last year
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 6 months ago
- GPU accelerated 3D image deconvolution using CUDA☆39Updated last year
- A napari plugin for itk-elastix☆39Updated this week
- PSFj - Know your microscope fluorescence☆22Updated 5 years ago
- Open-source, GPU accelerated code for deskewing and deconvolving lattice light sheet data☆27Updated 5 years ago
- A Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.☆83Updated 2 months ago
- 3D Structured illumination microscopy (3D-SIM) reconstruction software☆31Updated last year
- Fast and Accurate 3D PSF Computation for Fluorescence Microscopy☆47Updated 3 weeks ago
- Archived: control, reconstruction, and analysis code for oblique plane microscopy.☆22Updated 7 months ago
- ☆38Updated last year
- The ImageJ wiki☆29Updated this week
- A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.☆91Updated 2 weeks ago
- The python-microscopy environment - an open-source package for light microscopy☆93Updated this week
- Matlab function to import ROIs from ImageJ☆27Updated 5 years ago
- Dataset EXploration & Processing☆32Updated 2 years ago
- Create 3D/4D animations using a natural language-based syntax☆61Updated 5 months ago
- Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.☆34Updated last year
- Z-stack Depth Colorcode ImageJ FIJI plugin☆25Updated last week
- Process images using SimpleITK in napari☆22Updated 6 months ago
- ☆10Updated last year
- navigate - open source light-sheet microscope controls☆38Updated last week
- ThunderSTORM: a comprehensive ImageJ plugin for SMLM data analysis and super-resolution imaging☆105Updated 7 years ago