lewlin / a-large-image-tiler

Related projects: ⓘ

• VeraPancaldiLab / tysserand
  Fast reconstruction of spatial networks from bioimages.
  ☆24Updated last month
• kreshuklab / go-nuclear
  Guides and code for 3D nuclear instance segmentation
  ☆20Updated 3 months ago
• imjoy-team / example-plugins
  ☆15Updated 3 years ago
• hinderling / napari_pixel_classifier
  An Ilastik-like interactive pixel classifier.
  ☆16Updated 2 weeks ago
• miti-consortium / MITI
  Minimum Information about Tissue Imaging
  ☆20Updated 11 months ago
• spatial-image / spatial-image
  A multi-dimensional spatial image data structure for scientific Python.
  ☆37Updated 2 months ago
• AllenCell / cvapipe_analysis
  Analysis of data produced by cvapipe for the variance paper
  ☆21Updated last week
• pachterlab / CBP_2021
  ☆16Updated 2 years ago
• soft-matter / pims_nd2
  Python nd2 reader based on the ND2 SDK
  ☆16Updated 2 years ago
• CellProfiler / notebooks
  Jupyter notebooks for CellProfiler and friends
  ☆12Updated 6 years ago
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆21Updated 11 months ago
• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆27Updated last week
• PreibischLab / STIM
  Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.
  ☆25Updated last month
• mdayao / ramces
  RAnking Markers for CEll Segmentation
  ☆12Updated 2 years ago
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆26Updated last week
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆22Updated 4 months ago
• AllenInstitute / aics-ml-segmentation
  AICS ML Segmentation (One-Way) Mirror
  ☆26Updated 3 years ago
• piximi / piximi_old
  a free, open-source web app for annotating, training, and evaluating image understanding algorithms
  ☆25Updated 2 years ago
• michaellee1 / CellSeg
  ☆20Updated last year
• bioimage-io / bioimageio-chatbot
  Your Personal Assistant in Computational Bioimaging.
  ☆26Updated last month
• oanegros / Blender_for_Biologists_2023
  ☆35Updated last month
• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆73Updated last week
• ilastik / ilastik-napari
  ilastik plugin for napari
  ☆13Updated 5 months ago
• GuignardLab / napari-sc3D-viewer
  A plugin to visualise 3D spatial single cell omics
  ☆21Updated 5 months ago
• CamaraLab / CAJAL
  A Python package using Gromov-Wasserstein distance to compare cell shapes
  ☆14Updated last week
• rahi-lab / YeaZ-GUI
  An interactive tool for segmenting yeast cells using deep learning.
  ☆27Updated 6 months ago
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆36Updated 2 weeks ago
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆76Updated this week
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆35Updated 2 years ago
• jluethi / napari-feature-visualization
  Visualizing feature measurements on label images in napari
  ☆10Updated last month