Alternatives and similar repositories for a-large-image-tiler

Users that are interested in a-large-image-tiler are comparing it to the libraries listed below

• royerlab / cytoself
  Self-supervised models for encoding protein localization patterns from microscopy images
  ☆77Updated 2 months ago
• broadinstitute / cell-health
  Predicting Cell Health with Morphological Profiles
  ☆37Updated 3 years ago
• CellProfiler / notebooks
  Jupyter notebooks for CellProfiler and friends
  ☆14Updated 7 years ago
• CellProfiler / CellProfiler-plugins
  Community-contributed and experimental CellProfiler modules.
  ☆69Updated last week
• AllenInstitute / aics-ml-segmentation
  AICS ML Segmentation (One-Way) Mirror
  ☆27Updated 4 years ago
• miti-consortium / MITI
  Minimum Information about Tissue Imaging
  ☆20Updated 2 years ago
• DanuserLab / u-shape3D
  Detect morphological motifs, such as blebs, filopodia, and lamellipodia, from 3D images of surfaces, particularly images of cell surfaces…
  ☆29Updated 6 months ago
• alxndrkalinin / cubic
  CUDA-accelerated 3D BioImage Computing
  ☆14Updated this week
• labsyspharm / ome-tiff-pyramid-tools
  Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.
  ☆17Updated 2 months ago
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 4 years ago
• VeraPancaldiLab / tysserand
  Fast reconstruction of spatial networks from bioimages.
  ☆25Updated 6 months ago
• cytomining / CytoTable
  Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.
  ☆16Updated last week
• cytomining / pycytominer
  Python package for processing image-based profiling data
  ☆124Updated last week
• piximi / piximi_old
  a free, open-source web app for annotating, training, and evaluating image understanding algorithms
  ☆25Updated 3 years ago
• mehta-lab / VisCy
  computer vision models for single-cell phenotyping
  ☆72Updated last week
• quantumjot / CellTracking
  Cell tracking using TensorFlow and BayesianTracker
  ☆22Updated 3 years ago
• cytomining / DeepProfiler
  Morphological profiling using deep learning
  ☆119Updated last year
• hammerlab / cytokit
  Microscopy Image Cytometry Toolkit
  ☆114Updated 3 years ago
• GuignardLab / napari-sc3D-viewer
  A plugin to visualise 3D spatial single cell omics
  ☆21Updated 4 months ago
• funkelab / linajea
  ☆18Updated 2 years ago
• cytomining / cytominer
  Methods for Image-Based Cell Profiling
  ☆51Updated last year
• spreka / biomagdsb
  This repository contains the codes to run the nuclei segmentation pipeline of the BIOMAG group inspired by Kaggle's Data Science Bowl 201…
  ☆55Updated 5 years ago
• mobie / mobie-viewer-fiji
  ☆39Updated this week
• VasylVaskivskyi / microaligner
  Image registration (alignment) software for large microscopy images
  ☆25Updated 2 years ago
• AllenCellModeling / cyto-dl
  ☆28Updated last month
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆38Updated last month
• hinderling / napari_pixel_classifier
  An Ilastik-like interactive pixel classifier.
  ☆16Updated last year
• funkelab / daisy
  Block-wise task scheduling for large nD volumes.
  ☆32Updated 6 months ago
• AllenCellModeling / pytorch_integrated_cell
  Integrated Cell project implemented in pytorch
  ☆44Updated last week
• psteinb / b3get
  a python module to download Broad Bioimage Benchmark Collection images
  ☆24Updated 6 years ago