Alternatives and similar repositories for tiktorch

Users that are interested in tiktorch are comparing it to the libraries listed below

• AllenCellModeling / czifile
  czi reader from https://www.lfd.uci.edu/~gohlke/code/czifile.py.html
  ☆15Updated 6 years ago
• filippocastelli / pyometiff
  OME-TIFF IO in python
  ☆21Updated last month
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆52Updated 6 months ago
• piximi / piximi_old
  a free, open-source web app for annotating, training, and evaluating image understanding algorithms
  ☆25Updated 3 years ago
• haesleinhuepf / napari-simpleitk-image-processing
  Process images using SimpleITK in napari
  ☆21Updated last week
• transformify-plugins / segmentify
  Python image segmentation plugin
  ☆31Updated 4 years ago
• AllenInstitute / aics-segmentation
  AICS Segmentation (One-Way) Mirror
  ☆45Updated 4 years ago
• funkelab / gunpowder
  A library to facilitate machine learning on multi-dimensional images.
  ☆82Updated last week
• haesleinhuepf / apoc
  Accelerated Pixel and Object Classifiers (APOC)
  ☆57Updated 2 months ago
• bigdataprocessor / bigdataprocessor2
  ☆20Updated 3 months ago
• NEUBIAS / training-resources
  Resources for teaching/preparing to teach bioimage analysis
  ☆56Updated this week
• stardist / stardist-napari
  StarDist plugin for napari
  ☆38Updated 8 months ago
• apeer-micro / apeer-ometiff-library
  Easily read and write ome-tiff images in python
  ☆27Updated last year
• Euro-BioImaging / BatchConvert
  A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…
  ☆22Updated 2 months ago
• Kapoorlabs-CAPED / VollSeg
  Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…
  ☆33Updated last month
• ilastik / ilastik-napari
  ilastik plugin for napari
  ☆14Updated last year
• ome / napari-ome-zarr
  A napari plugin for zarr backed OME-NGFF images
  ☆33Updated last week
• VeraPancaldiLab / tysserand
  Fast reconstruction of spatial networks from bioimages.
  ☆25Updated 2 weeks ago
• nvladimus / npy2bdv
  Fast writing of numpy 3d-arrays into HDF5 Fiji/BigDataViewer files.
  ☆35Updated 8 months ago
• AllenInstitute / aics-ml-segmentation
  AICS ML Segmentation (One-Way) Mirror
  ☆27Updated 4 years ago
• trasse / OpSeF-IV
  ☆25Updated 4 years ago
• napari-threedee / napari-threedee
  A 3D interactivity toolbox for napari
  ☆34Updated 3 weeks ago
• haesleinhuepf / the-segmentation-game
  Gamified image segmentation quality estimation
  ☆17Updated last week
• multiFISH / EASI-FISH
  Tools and scripts for EASI-FISH image data analysis
  ☆17Updated 2 years ago
• juglab / labkit-ui
  Advanced Tool for Labeling And Segmentation
  ☆36Updated 6 months ago
• m-albert / MVRegFus
  Python module for registering and fusing multi-view microscopy data
  ☆23Updated 2 months ago
• lowe-lab-ucl / arboretum
  Track and lineage visualization with btrack and Napari
  ☆45Updated 6 months ago
• manzt / napari-lazy-openslide
  Lazily load multiscale whole-slide images with openslide and dask
  ☆33Updated 2 years ago
• ome / ngff
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆132Updated this week
• czbiohub-sf / iohub
  Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata
  ☆35Updated this week