lazear / simd-euclidean

Related projects: ⓘ

• Daniel-Liu-c0deb0t / simple-saca
  Hardware go brrr bounded context suffix array construction algorithm
  ☆17Updated 10 months ago
• informationsea / bgzip-rs
  bgzip support for Rust
  ☆14Updated 10 months ago
• petabi / petal-decomposition
  Matrix decomposition algorithms including PCA (principal component analysis) and ICA (independent component analysis)
  ☆13Updated last month
• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆28Updated this week
• dlesl / gb-io
  A Rust library for parsing, writing and manipulating Genbank sequence files
  ☆14Updated 11 months ago
• chfi / waragraph
  ☆24Updated 5 months ago
• markschl / seqtool
  Fast and flexible tool for reading, modifying and writing biological sequences
  ☆17Updated this week
• 10XGenomics / rust-toolbox
  Rust utility code
  ☆32Updated 7 months ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆30Updated last year
• 38 / grass
  ☆21Updated 2 years ago
• zaeleus / squab
  Alignment-based gene expression quantification
  ☆25Updated 3 months ago
• zachcp / bioinformaticstoolkit
  Build and deploy cross platform bioinformatic utilities with Rust.
  ☆14Updated last month
• informationsea / vcf-rs
  Rust implmentation of VCF parser
  ☆23Updated last year
• 10XGenomics / rust-shardio
  Out-of-memory sorting of large datasets map / reduce style processing
  ☆47Updated 2 weeks ago
• ekg / pca
  PCA in rust
  ☆14Updated last year
• arewebioyet / arewebioyet.github.io
  Rust in bioinformatics and computational biology
  ☆19Updated last year
• anp / parasailors
  Rust bindings to parasail, a SIMD-accelerated pairwise sequence alignment library.
  ☆21Updated 8 years ago
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated last year
• fastobo / fastobo
  Faultless AST for Open Biomedical Ontologies.
  ☆27Updated 6 months ago
• slotThe / rq
  Functional command-line JSON processor
  ☆24Updated last month
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆68Updated 9 months ago
• Picani / fastax
  Make phylogenetic trees and lineages from the NCBI Taxonomy database
  ☆13Updated last year
• luizirber / niffler
  Simple and transparent support for compressed files.
  ☆74Updated 3 months ago
• jean-pierreBoth / annembed
  data embedding based on approximate nearest neighbour
  ☆26Updated 2 months ago
• nlhepler / spoa-rs
  A rust wrapper for the spoa C++ partial order alignment library
  ☆10Updated 2 months ago
• COMBINE-lab / mazu
  A Rust library for building modular, fast and compact indexes over genomic data
  ☆13Updated 9 months ago
• sstadick / rust-lapper
  Rust implementation of a fast, easy, interval tree library nim-lapper
  ☆55Updated 5 months ago
• ostnam / rust-wfa
  ☆11Updated 2 years ago
• aseyboldt / fastq-rs
  ☆46Updated 2 years ago
• Cydhra / vers
  Succinct data structures using very efficient rank and select
  ☆58Updated last week