Multi-dimensional, trans-omics metabolic maps.
☆56Nov 13, 2025Updated 11 months ago
Alternatives and similar repositories for shu
Users that are interested in shu are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A batteries-included template for Bayesian data analysis projects☆23Apr 10, 2024Updated 2 years ago
- Teaching materials for cobrapy, cameo, escher and DD-DeCaF☆29Jul 12, 2022Updated 4 years ago
- Symbolic Kinetic Models with Python☆38Jun 4, 2025Updated last year
- A compact metabolic model of Escherichia Coli core and biosynthetic metabolism☆14Mar 17, 2026Updated 7 months ago
- ☆12Sep 14, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Collection of genome-scale metabolic models, genomes, and scripts for At-LSPHERE bacterial culture collection☆10Jul 25, 2023Updated 3 years ago
- Rapidly extract reads from FASTX files based on taxonomic classification via Kraken2.☆16Jun 17, 2026Updated 4 months ago
- Enzyme-constrained genome-scale models in python☆40Oct 25, 2023Updated 3 years ago
- cameo - computer aided metabolic engineering & optimization☆129Nov 7, 2022Updated 4 years ago
- Data-Driven Constraint-based analysis☆12Nov 4, 2022Updated 4 years ago
- Curation and analysis of metabolic models☆37Oct 31, 2026Updated last week
- FLYCOP (FLexible sYnthetic Consortium OPtimization)☆12Sep 24, 2018Updated 8 years ago
- ReFramed: metabolic modeling package☆63Jun 26, 2026Updated 4 months ago
- A simplified python interface to COPASI.☆29Oct 24, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆21Aug 29, 2025Updated last year
- MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.☆13Aug 21, 2024Updated 2 years ago
- PyBioPAX: A python implementation of the BioPAX object model☆27May 10, 2024Updated 2 years ago
- Python library for SBGN☆12Nov 2, 2026Updated last week
- A Python interface to gb-io, a fast GenBank parser written in Rust.☆25May 21, 2026Updated 5 months ago
- Absolute quantification package based on quantms.io☆16Sep 16, 2026Updated last month
- Minimum plain text representation of kmer sets☆20Jan 30, 2025Updated last year
- Calls somatic SNVs, indels, and allelic copy number jointly across multiple samples from the same patient. These can be standard tumor/n…☆10Oct 29, 2020Updated 6 years ago
- cy3sbml: SBML for Cytoscape 3☆16Nov 1, 2026Updated last week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A Vim Plugin / Run Nyancat on Vim's popup☆11Sep 27, 2020Updated 6 years ago
- Partial Order Alignment with consensus CLI and Rust library☆13Oct 21, 2026Updated 3 weeks ago
- ☆16Dec 20, 2024Updated last year
- A minimal copy fastq and fasta reader built for parallel support and paired end processing☆51Oct 22, 2026Updated 3 weeks ago
- ☆11Mar 27, 2026Updated 7 months ago
- Tutorial on survival modeling with omics data☆12May 6, 2026Updated 6 months ago
- ☆11Oct 23, 2025Updated last year
- A Rust library for storing generic genomic data by sorted chromosome name☆18Sep 26, 2024Updated 2 years ago
- Python package for analyzing and visualizing iModulons☆16Nov 2, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- CarveMe: genome-scale metabolic model reconstruction☆225Sep 12, 2025Updated last year
- A next-generation grammar of interactive graphics for R☆20Oct 31, 2026Updated last week
- An integrated visual environment for metabolic modeling methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as…☆71Nov 5, 2026Updated last week
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- ☆14Jan 31, 2020Updated 6 years ago
- Multi-omics data normalisation, model fitting and visualisation.☆27Apr 6, 2023Updated 3 years ago
- Re-analysis of data provided by Gihawi et al. 2023 bioRxiv☆27Aug 8, 2023Updated 3 years ago
Are these results useful?