Alternatives and similar repositories for shu

Users that are interested in shu are comparing it to the libraries listed below

• noamteyssier / ggetrs
  Efficient querying of biological databases
  ☆42Updated last month
• dlesl / gb-io
  A Rust library for parsing, writing and manipulating Genbank sequence files
  ☆21Updated 7 months ago
• rust-bio / rust-bio-types
  A library of common biomedical types.
  ☆40Updated 8 months ago
• luizirber / niffler
  Simple and transparent support for compressed files.
  ☆81Updated 10 months ago
• TravisWheelerLab / sufr
  Parallel Construction of Suffix Arrays in Rust
  ☆26Updated 7 months ago
• informationsea / bgzip-rs
  bgzip support for Rust
  ☆16Updated 2 years ago
• ocxtal / udon
  BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing
  ☆20Updated 2 years ago
• anp / parasailors
  Rust bindings to parasail, a SIMD-accelerated pairwise sequence alignment library.
  ☆21Updated 9 years ago
• markschl / seq_io
  FASTA and FASTQ parsing in Rust
  ☆80Updated 9 months ago
• RagnarGrootKoerkamp / rust-phylogeny
  Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)
  ☆15Updated 7 months ago
• ferritin-bio / ferritin
  protein utilities in Rust
  ☆32Updated last month
• aseyboldt / fastq-rs
  ☆50Updated 3 years ago
• RagnarGrootKoerkamp / simd-sketch
  Compute bottom-s sketches and s-buckets sketches, using simd-minimizers crate.
  ☆20Updated last week
• 10XGenomics / rust-toolbox
  Rust utility code
  ☆32Updated last year
• lazear / simd-euclidean
  Calculation of euclidean distance between vectors, with SIMD
  ☆11Updated last year
• althonos / nafcodec
  Rust coder/decoder for Nucleotide Archival Format (NAF) files.
  ☆10Updated 10 months ago
• jakobnissen / alen
  Simple terminal alignment viewer
  ☆85Updated 4 months ago
• Daniel-Liu-c0deb0t / cute-nucleotides
  Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.
  ☆129Updated 4 years ago
• sstadick / rust-lapper
  Rust implementation of a fast, easy, interval tree library nim-lapper
  ☆67Updated 5 months ago
• jeff-k / bio-seq
  Bit-packed and well-typed biological sequences
  ☆37Updated last month
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆101Updated 2 weeks ago
• frjnn / bhtsne
  Parallel Barnes-Hut t-SNE implementation written in Rust.
  ☆87Updated 5 months ago
• fastobo / fastobo
  Faultless AST for Open Biomedical Ontologies.
  ☆29Updated last month
• umccr / htsget-rs
  A server implementation of the htsget protocol for bioinformatics in Rust
  ☆47Updated this week
• stjude-rust-labs / omics
  Foundations for the Rust omics ecosystem.
  ☆12Updated last month
• Daniel-Liu-c0deb0t / simple-saca
  Hardware go brrr bounded context suffix array construction algorithm
  ☆19Updated 2 years ago
• noamteyssier / paraseq
  A minimal copy fastq and fasta reader built for parallel support and paired end processing
  ☆38Updated 2 months ago
• ekg / pca
  PCA in rust
  ☆15Updated 2 years ago
• fastlmm / bed-reader
  A library for easy, fast, and efficient reading & writing of PLINK Bed files
  ☆82Updated 8 months ago
• zachcp / bioinformaticstoolkit
  Build and deploy cross platform bioinformatic utilities with Rust.
  ☆19Updated 8 months ago