data embedding based on approximate nearest neighbour
☆45Feb 28, 2026Updated 8 months ago
Alternatives and similar repositories for annembed
Users that are interested in annembed are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- R extensions to N2 implementing approximate nearest neighbor search methods☆10Jun 14, 2026Updated 4 months ago
- Embedding-based indexing for compact storage and rapid querying of bacterial pan-genomes☆25Sep 27, 2026Updated last month
- A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code.☆25Nov 25, 2025Updated 11 months ago
- LMAS - Last (Meta)Genomic Assembler Standing☆12Dec 21, 2022Updated 3 years ago
- Compressed, associative, and exact hash table for k-mers☆11Oct 15, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Taxonomic Classification of Bacteria and Archaea Genomes☆19Aug 17, 2026Updated 2 months ago
- Rust wrapper for SuiteSparse:GraphBLAS☆15May 28, 2026Updated 5 months ago
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆53May 5, 2026Updated 6 months ago
- Metapresence is a Python tool to calculate metrics to assess the evenness of the coverage distribution on DNA sequences, in order to infe…☆10Feb 18, 2025Updated last year
- More scalable dereplication for metagenome assembled genomes☆93Updated this week
- Reproducible hybrid metagenomics with MAG recovery and strain-level resolution☆11Aug 20, 2026Updated 2 months ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆10Dec 21, 2022Updated 3 years ago
- R package for differential expression analysis in metatranscriptomics☆12Jul 18, 2024Updated 2 years ago
- Tools to explore Minimum Decycling Sets (MDSs) of the de Bruijn graph☆12Sep 11, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- UMAP (Uniform Manifold Approximation and Projection) in Rust☆32Oct 24, 2026Updated 2 weeks ago
- A modular pipeline for constructing Pathway/Genome Databases from environmental sequence information☆13Apr 4, 2025Updated last year
- Project based on GrapeTree, a fully interactive, tree visualization program within EnteroBase, which supports facile manipulations of bot…☆13Sep 1, 2026Updated 2 months ago
- A taxonomic classifier for shotgun metagenomics reads☆10Aug 26, 2026Updated 2 months ago
- Identifying misassemblies via deep learning☆11May 1, 2024Updated 2 years ago
- Measure research software reach without hand-counting the internet. Dated snapshots, legit totals, grant-ready reports.☆26Updated this week
- Fast and space-efficient taxonomic classification of long reads☆47Jul 16, 2026Updated 3 months ago
- Simplistic API for deep learning tensor operations☆37Jun 22, 2026Updated 4 months ago
- THRESHER is a framework that replaces fixed cutoffs with data-driven phylothresholds - the SNP thresholds corrected for phylogenetic topo…☆14Oct 17, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high…☆13Mar 7, 2024Updated 2 years ago
- [AAAI'22] RepBin: Constraint-Based Graph Representation Learning for Metagenomic Binning☆25Jan 26, 2024Updated 2 years ago
- RabbitTClust: enabling fast clustering analysis of millions bacteria genomes with MinHash sketches☆54Updated this week
- spotify/annoy bindings for Rust.☆19May 2, 2023Updated 3 years ago
- Repository for codes, analyses and visualizations for the CAMI II challenges☆15Sep 4, 2023Updated 3 years ago
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Oct 8, 2026Updated 3 weeks ago
- Pathogenfinder2☆20Apr 20, 2026Updated 6 months ago
- One pure-Rust binary that finds genes in phages, viruses, giant viruses, crassphages, bacteria, archaea, eukaryotes — and raw sequencing …☆36Oct 14, 2026Updated 3 weeks ago
- Computation of average nucleotide identity with the use of MMseqs2☆24Dec 11, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- CLI tool for querying the Genome Taxonomy Database (GTDB). Batch search, genome cards, taxon lineages, and cross-release taxonomic compar…☆33Sep 18, 2026Updated last month
- Early-stage machine learning library in Rust☆10Apr 15, 2021Updated 5 years ago
- ☯️🧬 Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs☆37Oct 24, 2025Updated last year
- CONTRAfold-SE - Learning RNA secondary structure (only) from structure probing data☆11Jul 11, 2024Updated 2 years ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆58May 8, 2026Updated 5 months ago
- A hybrid assembly and MAG recovery pipeline (and more!)☆120Oct 29, 2026Updated last week
- Build phylogenomic datasets in seconds☆15Oct 28, 2026Updated last week