lauzingaretti / DeepGPLinks
A tool to implement Genomic Prediction Experiments using Deep Learning
☆17Updated 2 years ago
Alternatives and similar repositories for DeepGP
Users that are interested in DeepGP are comparing it to the libraries listed below
Sorting:
- Repository for code used for publications☆28Updated 7 months ago
- DeepGS is a R package for predicting phenotypes from genotypes using deep learning techniques.☆53Updated 3 years ago
- An R framework for phylostratigraphy☆32Updated this week
- NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. A complete list of functionalities …☆53Updated 2 months ago
- ☆35Updated 3 years ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆38Updated 4 months ago
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆39Updated last year
- This is a read-only mirror of the CRAN R package repository. rrBLUP — Ridge Regression and Other Kernels for Genomic Selection. Homepag…☆14Updated last year
- Methods for examining PCA locally along the genome.☆83Updated 11 months ago
- Reliable Association INference By Optimizing Weights with R (R package for SNP-set GWAS and multi-kernel mixed model)☆24Updated 3 weeks ago
- ☆41Updated 2 years ago
- quickLD, a large-scale, long-range Linkage Disequilibrium analysis tool utilizing parallel CPU, GPU or heterogeneous computing.☆10Updated 3 years ago
- Flexible Genotyping of Polyploids using Next Generation Sequencing Data☆29Updated 9 months ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- ☆35Updated 2 years ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆65Updated last month
- course about NGS data processing: genomics and transcriptomics☆33Updated 4 years ago
- QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis☆79Updated 5 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- Codes for the lettuce resequencing project in 2020☆31Updated 4 years ago
- Repository of common bioinformatics scripts☆39Updated 3 years ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆59Updated 4 months ago
- my bin directory☆45Updated 9 months ago
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- R-package: Calculation of haplotype blocks and libraries☆32Updated 2 weeks ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆52Updated last week
- ☆18Updated 3 years ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆103Updated last month
- Fast analysis and visualization of latent clusters in population genetic data☆75Updated 3 years ago
- High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.☆66Updated last year