A tool to implement Genomic Prediction Experiments using Deep Learning
☆17Mar 24, 2023Updated 3 years ago
Alternatives and similar repositories for DeepGP
Users that are interested in DeepGP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Practical Deep Learning for Genomic Prediction: A Keras based guide to implement deep learning☆72Jul 6, 2023Updated 3 years ago
- simulate sequence data and complicated pedigree structures☆16Apr 5, 2023Updated 3 years ago
- Chromax is a breeding simulator based on JAX.☆10Jun 6, 2025Updated last year
- Repository for code used for publications☆31Apr 23, 2026Updated 5 months ago
- R package for breeding program simulations☆75Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- SambaR: Snp datA Management and Basic Analyses in R☆33Jul 9, 2026Updated 3 months ago
- Genomic Annotation in Livestock for positional candidate LOci☆14Feb 26, 2021Updated 5 years ago
- Yield Prediction Using Deep Learning on Multivariate Time Series Data☆19May 22, 2021Updated 5 years ago
- R functions related to pedigrees☆14Sep 29, 2025Updated last year
- Genetic maps in autopolyploids☆33Jan 12, 2026Updated 8 months ago
- ☆18Dec 15, 2021Updated 4 years ago
- DeepGS is a R package for predicting phenotypes from genotypes using deep learning techniques.☆62Dec 3, 2021Updated 4 years ago
- Package for multi-environment trial analysis☆40Oct 16, 2024Updated last year
- GS3, software for genomic prediction and whole genome Bayesian analysis☆10Dec 18, 2017Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Draw genetic map (linkage map) in R☆14Nov 12, 2017Updated 8 years ago
- DeepREAL: A Deep Learning Powered Multi-scale Modeling Framework Towards Predicting Out-of-distribution Receptor Activity of Ligand Bindi…☆11Apr 23, 2022Updated 4 years ago
- An R package to compute relationship matrices for diploid and autotetraploid species☆24Dec 12, 2025Updated 9 months ago
- Helpful handful of programs, completely open-source and free☆11Mar 26, 2021Updated 5 years ago
- AlphaImpute2: pedigree- and population-based genotype imputation☆15Aug 24, 2026Updated last month
- Added functions for Echidna in R☆11Apr 14, 2023Updated 3 years ago
- ☆10Nov 4, 2021Updated 4 years ago
- Phase reads, assemble haplotypes and detect SVs☆19Nov 11, 2020Updated 5 years ago
- ☆29Jun 14, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A software package that includes BayesCpi, BayesR, BayesRC, and two extensions of BayesRC to overlapping data: BayesRC+ and BayesRCpi☆16Feb 28, 2023Updated 3 years ago
- Large image tiling and stitching library for scaling Python functions to arbitrary input image sizes.☆13Nov 17, 2025Updated 10 months ago
- Code for "Gene-Gene Interaction Detection with Deep Learning"☆13Oct 26, 2022Updated 3 years ago
- Bison-Fly is the NDSU Spring Wheat UAV Pipeline developed in partnership with Drone2Phenome UAV community (D2P). In this pipeline we are …☆32Aug 12, 2024Updated 2 years ago
- Python Breeding Optimizer and Simulator: A Python library for simulating and optimizing breeding pipelines.☆15Dec 10, 2024Updated last year
- QTL analysis in diallel populations☆13Mar 13, 2026Updated 6 months ago
- Influence of algorithms, parameter choice, and feature selection on genomic prediction accuracy☆13Apr 2, 2018Updated 8 years ago
- two-stage analysis of multi-environment trials for genomic selection and GWAS☆32Aug 29, 2026Updated last month
- Using genome-wide markers for polyploid breeding☆14May 2, 2026Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆12Sep 4, 2025Updated last year
- Command line tool to plot genomic coverage from a BAM file☆14Apr 5, 2023Updated 3 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆16Apr 28, 2025Updated last year
- Julia for Whole-genome Analysis Software☆108Jul 12, 2026Updated 2 months ago
- Deep Learning tool trained on protein sequence embeddings from protein language models to accurately detect remote homologues for CATH su…☆14Jun 22, 2022Updated 4 years ago
- Python package for Genome-Wide Association Studies (GWAS). Implements GLM, MLM, FarmCPU, and BLINK with support for VCF, PLINK, HapMap, a…☆16Sep 21, 2026Updated 2 weeks ago
- Plant breeding simulations with AlphaSimR☆33Jan 5, 2025Updated last year