lauzingaretti / DeepGPLinks
A tool to implement Genomic Prediction Experiments using Deep Learning
☆17Updated 2 years ago
Alternatives and similar repositories for DeepGP
Users that are interested in DeepGP are comparing it to the libraries listed below
Sorting:
- DeepGS is a R package for predicting phenotypes from genotypes using deep learning techniques.☆53Updated 3 years ago
- Repository for code used for publications☆29Updated last month
- This is a read-only mirror of the CRAN R package repository. rrBLUP — Ridge Regression and Other Kernels for Genomic Selection. Homepag…☆14Updated last year
- ☆36Updated 3 years ago
- QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis☆82Updated 5 years ago
- Flexible Genotyping of Polyploids using Next Generation Sequencing Data☆30Updated 2 months ago
- tutorial on pggb☆36Updated 10 months ago
- Practical Deep Learning for Genomic Prediction: A Keras based guide to implement deep learning☆69Updated 2 years ago
- BLINK: A Package for Next Level of Genome Wide Association Studies with Both Individuals and Markers in Millions☆38Updated 8 months ago
- Kinship Adjusted Multi-Loci Best Linear Unbiased Prediction☆46Updated 7 months ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆33Updated last month
- Methods for examining PCA locally along the genome.☆86Updated last year
- A set of functions to visualise genotypes based on a VCF☆87Updated 3 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- A pipeline to generate a phylogenetic tree from huge SNP data☆92Updated last year
- kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.☆43Updated last year
- Repository of common bioinformatics scripts☆39Updated 4 years ago
- R-package: Calculation of haplotype blocks and libraries☆34Updated 4 months ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆76Updated last year
- perSVade: personalized Structural Variation detection☆40Updated 2 months ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆29Updated 6 years ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆65Updated 2 weeks ago
- STITCH - Sequencing To Imputation Through Constructing Haplotypes☆85Updated 3 weeks ago
- ☆42Updated 3 years ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆52Updated 4 months ago
- ☆17Updated 5 years ago
- GWAS software that can handle autopolyploids☆30Updated last month
- Documentation for Evolview☆29Updated 4 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- A catalogue of available long read sequencing data analysis tools☆83Updated 2 months ago