A tool to implement Genomic Prediction Experiments using Deep Learning
☆17Mar 24, 2023Updated 3 years ago
Alternatives and similar repositories for DeepGP
Users that are interested in DeepGP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Practical Deep Learning for Genomic Prediction: A Keras based guide to implement deep learning☆73Jul 6, 2023Updated 2 years ago
- simulate sequence data and complicated pedigree structures☆16Apr 5, 2023Updated 3 years ago
- Chromax is a breeding simulator based on JAX.☆10Jun 6, 2025Updated last year
- Repository for code used for publications☆30Apr 23, 2026Updated 2 months ago
- Bayesian Multi-Trait Multi-Environment for genomic selection[R package] [Dev version]☆19Aug 6, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Yield Prediction Using Deep Learning on Multivariate Time Series Data☆18May 22, 2021Updated 5 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆32Jun 9, 2026Updated 3 weeks ago
- Ascertained Sequentially Markovian Coalescent☆18Oct 22, 2025Updated 8 months ago
- R package for breeding program simulations☆68May 8, 2026Updated last month
- R functions related to pedigrees☆14Sep 29, 2025Updated 9 months ago
- ☆18Dec 15, 2021Updated 4 years ago
- Genetic maps in autopolyploids☆33Jan 12, 2026Updated 5 months ago
- DeepGS is a R package for predicting phenotypes from genotypes using deep learning techniques.☆60Dec 3, 2021Updated 4 years ago
- Draw genetic map (linkage map) in R☆14Nov 12, 2017Updated 8 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Package for multi-environment trial analysis☆39Oct 16, 2024Updated last year
- Plant breeding simulations with AlphaSimR☆29Jan 5, 2025Updated last year
- Genomic Annotation in Livestock for positional candidate LOci☆14Feb 26, 2021Updated 5 years ago
- DeepREAL: A Deep Learning Powered Multi-scale Modeling Framework Towards Predicting Out-of-distribution Receptor Activity of Ligand Bindi…☆11Apr 23, 2022Updated 4 years ago
- Helpful handful of programs, completely open-source and free☆11Mar 26, 2021Updated 5 years ago
- AlphaImpute2: pedigree- and population-based genotype imputation☆12Jun 12, 2026Updated 2 weeks ago
- QUILT: Low coverage whole genome sequence imputation with large reference panels☆67May 5, 2026Updated last month
- GS3, software for genomic prediction and whole genome Bayesian analysis☆10Dec 18, 2017Updated 8 years ago
- ☆12Sep 4, 2025Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- MultiSuSiE is a multi-ancestry extension of the Sum of Single Effects model☆19Feb 15, 2026Updated 4 months ago
- Phase reads, assemble haplotypes and detect SVs☆19Nov 11, 2020Updated 5 years ago
- Using genome-wide markers for polyploid breeding☆12May 2, 2026Updated last month
- Command line tool to plot genomic coverage from a BAM file☆14Apr 5, 2023Updated 3 years ago
- Python Breeding Optimizer and Simulator: A Python library for simulating and optimizing breeding pipelines.☆15Dec 10, 2024Updated last year
- two-stage analysis of multi-environment trials for genomic selection and GWAS☆30May 18, 2026Updated last month
- Deep Learning tool trained on protein sequence embeddings from protein language models to accurately detect remote homologues for CATH su…☆14Jun 22, 2022Updated 4 years ago
- Website for Introduction to Data Science at University of Edinburgh, 2020.☆11Jan 30, 2022Updated 4 years ago
- Code for "Gene-Gene Interaction Detection with Deep Learning"☆13Oct 26, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Julia for Whole-genome Analysis Software☆106Jun 11, 2026Updated 2 weeks ago
- A comprehensive database for efficient retrieve and analysis of SNPs among 1210 maize lines☆14Oct 10, 2022Updated 3 years ago
- Influence of algorithms, parameter choice, and feature selection on genomic prediction accuracy☆13Apr 2, 2018Updated 8 years ago
- Reading ASD Binary Files in R☆15Sep 13, 2017Updated 8 years ago
- QTL analysis in diallel populations☆12Mar 13, 2026Updated 3 months ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆16Apr 28, 2025Updated last year
- An emacs client for the pushbullet android app☆18Aug 9, 2014Updated 11 years ago