Python package for Genome-Wide Association Studies (GWAS). Implements GLM, MLM, FarmCPU, and BLINK with support for VCF, PLINK, HapMap, and CSV genotype formats.
☆16Sep 21, 2026Updated 2 weeks ago
Alternatives and similar repositories for PANICLE
Users that are interested in PANICLE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code for "Using machine learning to combine genetic and environmental data for maize grain yield predictions across multi-environment tri…☆22Jul 23, 2024Updated 2 years ago
- Phasing and genotype Imputation comparison. Have been evaluated: BEAGLE 5.4, EAGLE 2.4.1, SHAPEIT 4, MINIMAC 4, IMPUTE 5, using accuracy …☆23Feb 29, 2024Updated 2 years ago
- ☆29Jun 14, 2025Updated last year
- Nextflow implementation of the GATK HaplotypeCaller pipeline☆13Dec 27, 2025Updated 9 months ago
- SNP and indel calls from multiple sequence alignment (MSA)☆13Nov 11, 2022Updated 3 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆15Dec 7, 2023Updated 2 years ago
- This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.☆73Updated this week
- This tutorial is a guide to perform TWAS with the data used in Torres‐Rodríguez, J. Vladimir, et al. "Population‐level gene expression ca…☆27Feb 23, 2026Updated 7 months ago
- ☆15Oct 15, 2024Updated last year
- ☆18Dec 15, 2021Updated 4 years ago
- A web app using Vision Transformers for quick and accurate diagnosis of plant diseases, aiding effective treatment and plant health.☆13Aug 5, 2026Updated 2 months ago
- ☆13Nov 4, 2024Updated last year
- An R package to run stochastic simulations of breeding scheme genetics☆10Nov 20, 2025Updated 10 months ago
- A tool to implement Genomic Prediction Experiments using Deep Learning☆17Mar 24, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆12Jun 12, 2023Updated 3 years ago
- CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on c…☆10Jun 9, 2022Updated 4 years ago
- ☆13Jul 8, 2026Updated 3 months ago
- ☆11Sep 16, 2021Updated 5 years ago
- Influence of algorithms, parameter choice, and feature selection on genomic prediction accuracy☆13Apr 2, 2018Updated 8 years ago
- The purpose of this repo is to allow continued development of the Extensible Computational Chemistry Environment (ECCE) which used to be …☆10Updated this week
- ☆12Feb 16, 2026Updated 7 months ago
- ☆13Sep 4, 2026Updated last month
- 《学个毛生信》源代码☆17May 8, 2026Updated 5 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A collection of commonly used formats for quick lookup.☆14Aug 3, 2026Updated 2 months ago
- ☆15Apr 20, 2021Updated 5 years ago
- ☆19Sep 20, 2020Updated 6 years ago
- PM520 Advanced Statistical Computing☆16Apr 3, 2026Updated 6 months ago
- Automated Machine Learning for Environmental Data-Driven Genome Prediction☆17Sep 12, 2025Updated last year
- Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis☆28Dec 15, 2025Updated 9 months ago
- Markdown syntax for HTML Details Tag with support across interactive (html) and non-interactive (latex, typst, word, ...).☆17Dec 28, 2025Updated 9 months ago
- G2P is an integrated genomic selection (GS) package for predicting phenotypes from genotypes. It includes 15 GS algorithms and 13 evaluat…☆18Sep 27, 2017Updated 9 years ago
- Neural network from scratch in Python using Numpy☆12May 28, 2017Updated 9 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- ☆15May 3, 2024Updated 2 years ago
- Detection and classification selective sweep use domain adaptive model☆11Apr 29, 2024Updated 2 years ago
- Lightweight Framework for Analysis Development☆15Aug 14, 2022Updated 4 years ago
- Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)☆20Nov 29, 2022Updated 3 years ago
- Linear mixed models on ARGs☆18Jan 16, 2026Updated 8 months ago
- ☆13Feb 2, 2023Updated 3 years ago