Alternatives and similar repositories for chromax

Users that are interested in chromax are comparing it to the libraries listed below

• mourisl / MSAplot
  Plot multiple sequence alignment (MSA)
  ☆16Updated last year
• lbcb-sci / GNNome
  A framework for training graph neural networks to untangle assembly graphs obtained from OLC-based de novo genome assemblers.
  ☆51Updated last month
• lvrcek / GNNome-assembly
  Learning to untangle genome assembly with graph neural networks.
  ☆72Updated last year
• dnbaker / bioseq
  Tokenizers and Machine Learning Models for biological sequence data
  ☆25Updated last year
• lh3 / OpenHGL
  Open Human Genome Library
  ☆56Updated 3 weeks ago
• pinellolab / GRAFIMO
  GRAph-based Finding of Individual Motif Occurrences
  ☆31Updated last year
• fmfi-compbio / coral-basecaller
  ☆12Updated 4 years ago
• c5shen / EMMA
  an ensemble usage of MAFFT-linsi --add on large datasets
  ☆13Updated last year
• mkpython3 / Mutation-Simulator
  A tool for simulating random mutations in any genome
  ☆43Updated last year
• pangenome / pggb-paper
  The PanGenome Graph Builder
  ☆16Updated last year
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆27Updated last month
• fawaz-dabbaghieh / bubble_gun
  ☆41Updated last month
• benlevyx / florabert
  Code necessary to reproduce experiments in "FloraBERT: cross-species transfer learning with attention-based neural networks for gene expr…
  ☆13Updated 3 years ago
• rikuu / Gap2Seq
  Gap2Seq is a gap filling and insertion genotyping tool.
  ☆22Updated last year
• zstephens / telogator2
  A method for measuring allele-specific telomere length and characterizing telomere variant repeat sequences from long reads.
  ☆25Updated last month
• google / deeppolisher
  Transformer-based sequence correction method for genome assembly polishing
  ☆95Updated 10 months ago
• bioinf-benchmarking / mapping-benchmarking
  Snakemake pipeline for benchmarking read mappers
  ☆16Updated 2 years ago
• LuoGroup2023 / DeChat
  Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat
  ☆25Updated 8 months ago
• anuradhawick / MetaBCC-LR
  Reference-free Binning of Metagenomics Long Reads using Coverage and Composition
  ☆20Updated last year
• songlab-cal / swga2
  ☆17Updated 2 years ago
• CuiMiao-HIT / miniSNV
  ☆19Updated last month
• HKU-BAL / Clair3-Trio
  Clair3-Trio: variant calling in trio using Nanopore long-reads
  ☆16Updated last year
• imsuneth / realfreq
  Realtime base modification frequency tool
  ☆13Updated 4 months ago
• mol-evol / panGPT
  A Generative Pre-Trained Transformer Package for Pangenomes
  ☆53Updated 7 months ago
• rzshrote / pybrops
  Python Breeding Optimizer and Simulator: A Python library for simulating and optimizing breeding pipelines.
  ☆11Updated last year
• move37-labs / nucleobench
  Repository for "NucleoBench: A Large-Scale Benchmark of Neural Nucleic Acid Design Algorithms"
  ☆25Updated last month
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆53Updated last year
• althonos / pymuscle5
  Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.
  ☆23Updated last year
• LHG-GG / I002C
  Telomere-to-Telomere diploid Indian Genome
  ☆14Updated 6 months ago
• anands-repo / hello
  DNN-based small variant caller
  ☆12Updated 3 years ago