reworkhow / XSim.jl

Related projects ⓘ

Alternatives and complementary repositories for XSim.jl

• dcjones / polee
  Analyzing RNA-Seq with approximate likelihood
  ☆26Updated 3 years ago
• rasmushenningsson / VariantCallFormat.jl
  Read and write VCF and BCF files
  ☆13Updated 7 months ago
• BioJulia / KmerAnalysis.jl
  K-mer counting algorithms and count-data utilities for the BioJulia framework
  ☆11Updated last year
• cannin / snp_plotter
  snp.plotter is an R package that creates publishable-quality plots of p-values using single SNP and/or haplotype data.
  ☆18Updated 9 months ago
• nguyetdang / BioGraph.jl
  A Julia package for handle genome graph in the GFA format.
  ☆11Updated 2 years ago
• QTCAT / qtcat
  Quantitative Trait Cluster Association Test in R
  ☆25Updated 3 years ago
• mfumagalli / ngsJulia
  ☆16Updated last month
• mcveanlab / treeseq-inference
  Work for the tree sequence inference paper.
  ☆23Updated 4 years ago
• OpenMendel / OrdinalGWAS.jl
  Genome-wide association studies (GWAS) for ordered categorical phenotypes
  ☆21Updated this week
• price0416 / DEvis
  DEvis: an R package for aggregation and visualization of differential expression data
  ☆20Updated 3 years ago
• Poissonfish / iPat
  iPat allows you to perform GWAS and GS with drags and clicks!
  ☆11Updated 2 years ago
• statgen / fivex
  Interactive eQTL visualizations
  ☆13Updated last year
• kkdey / Logolas
  R package for Enrichment Depletion Logos (EDLogos) and String Logos
  ☆27Updated 5 years ago
• msesia / knockoffgwas
  A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.
  ☆14Updated 2 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆28Updated 3 months ago
• lh3 / asub
  A unified array job submitter for LSF, SGE/UGE and Slurm
  ☆32Updated 3 weeks ago
• BioJulia / XAM.jl
  Parse and process SAM and BAM formatted files
  ☆27Updated 3 months ago
• bionitio-team / bionitio-python
  Demonstrating best practices for bioinformatics command line tools
  ☆26Updated 4 years ago
• StoreyLab / bnpsd
  R package to model and simulate admixed populations
  ☆8Updated last year
• rqtl / qtl2
  QTL analysis software for high-dimensional data and complex cross designs
  ☆34Updated 2 months ago
• ListerLab / HOME
  DMR Identification Tool
  ☆34Updated last year
• OpenMendel / MendelImpute.jl
  OpenMendel package for haplotyping and imputation
  ☆24Updated this week
• ikmb / eagleimp
  ☆21Updated last month
• frahik / BMTME
  Bayesian Multi-Trait Multi-Environment for genomic selection[R package] [Dev version]
  ☆17Updated last year
• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆21Updated 2 years ago
• qunfengdong / MicroGMT
  Mutation tracker for microbial genomes
  ☆15Updated 4 years ago
• mdshw5 / hamstring
  Tools for generating and decoding error-correcting DNA barcodes
  ☆16Updated 2 years ago
• mpinese / nimpress
  Polygenic score calculation from VCF in Nim.
  ☆15Updated 3 years ago
• quinlan-lab / ccr
  Building the constrained coding regions (CCR) model
  ☆16Updated 5 years ago
• phytest-devs / phytest
  Quality control for phylogenetic analyses
  ☆13Updated last month