latch-verified / bulk-rnaseqLinks
Bulk RNA-seq analysis.
☆35Updated 2 years ago
Alternatives and similar repositories for bulk-rnaseq
Users that are interested in bulk-rnaseq are comparing it to the libraries listed below
Sorting:
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated this week
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆73Updated this week
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆50Updated 3 years ago
- ☆25Updated last year
- optimization of ribosome P-site positioning in ribosome profiling data☆59Updated 11 months ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆123Updated 3 months ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆78Updated 3 months ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆32Updated 5 years ago
- Bioinformatics one-liner for 100 days☆49Updated last year
- Collection of analysis tools for quantitative trait loci☆61Updated 3 weeks ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆122Updated last month
- From RNA-seq raw reads to enriched pathways by DEGs☆33Updated last year
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated last year
- ☆27Updated 2 years ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆88Updated last week
- ☆84Updated 4 months ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆49Updated 2 years ago
- Issue tracker for the Biostar Handbook☆64Updated 3 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆90Updated 3 months ago
- An R interface to the MEME Suite☆54Updated 3 weeks ago
- machine-readable file format for genomic library sequence and structure☆126Updated 4 months ago
- Bioinformatics and genomics resources☆83Updated 3 weeks ago
- Genomic coordinates of problematic genomic regions as GRanges☆51Updated last month
- Quantification of transposable element expression using RNA-seq☆79Updated last year
- GREAT Analysis - Functional Enrichment on Genomic Regions☆95Updated last month
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆51Updated 2 months ago
- pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs☆34Updated 3 months ago
- ☆74Updated 2 years ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆63Updated 7 months ago