latch-verified / bulk-rnaseqLinks
Bulk RNA-seq analysis.
☆35Updated last year
Alternatives and similar repositories for bulk-rnaseq
Users that are interested in bulk-rnaseq are comparing it to the libraries listed below
Sorting:
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆60Updated last month
- coding exercise using TCGA immune infiltration data☆45Updated last year
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 3 months ago
- ☆79Updated 3 weeks ago
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆46Updated 2 years ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆31Updated 4 years ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆45Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆113Updated 4 months ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆78Updated last week
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated 2 weeks ago
- Quantification of transposable element expression using RNA-seq☆70Updated last year
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆76Updated 3 years ago
- SingleCell Nanopore sequencing data analysis☆60Updated last week
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- Bioinformatics one-liner for 100 days☆47Updated last year
- Collection of analysis tools for quantitative trait loci☆55Updated 2 months ago
- Genome-wide assessment of differential translations with ribosome profiling data☆19Updated 3 weeks ago
- Merging paired-end reads and removing adapters☆44Updated 2 months ago
- A continually expanding collection of RNA-seq tools☆50Updated 7 months ago
- FA2021 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program☆19Updated 3 years ago
- An R interface to the MEME Suite☆50Updated 7 months ago
- ☆59Updated 3 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆102Updated 6 months ago
- ☆53Updated this week
- Fast and flexible ORF finder☆69Updated 3 years ago
- Integrative pathway enrichment analysis of multivariate omics data☆109Updated 2 weeks ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆41Updated 6 months ago
- Publication quality NGS track plotting☆113Updated 2 years ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆54Updated last month
- Config files used to define parameters specific to compute environments at different Institutions☆99Updated this week