latch-verified / bulk-rnaseq

Related projects: ⓘ

• immunitastx / coding_exercise_TCGA_infiltration
  coding exercise using TCGA immune infiltration data
  ☆42Updated 7 months ago
• sheynkman-lab / Long-Read-Proteogenomics
  A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
  ☆38Updated last year
• mlbendall / telescope
  Quantification of transposable element expression using RNA-seq
  ☆62Updated 7 months ago
• sbooeshaghi / single-cell-vocabulary
  ☆25Updated 7 months ago
• epigen / atacseq_pipeline
  Ultimate ATAC-seq Data Processing & Quantification Workflow. A Snakemake implementation of the BSF's ATAC-seq Data Processing Pipeline ex…
  ☆42Updated this week
• tsailabSJ / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆23Updated last month
• nickhir / GermlineMutationCalling
  An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM fil…
  ☆10Updated 3 years ago
• hbctraining / Intro-to-rnaseq-hpc-salmon
  ☆47Updated 3 years ago
• harbourlab / SparK
  Publication quality NGS track plotting
  ☆103Updated 2 years ago
• liulab-dfci / bioinfo-combio
  The rendered book can be found at https://liulab-dfci.github.io/bioinfo-combio/
  ☆84Updated 2 years ago
• CebolaLab / RNA-seq
  Step-by-step analysis pipeline for RNA-seq data
  ☆58Updated last year
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆112Updated 2 years ago
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆65Updated 3 weeks ago
• hbc / NGS_Data_Analysis_Course
  ☆22Updated 8 years ago
• htseq / htseq
  HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.
  ☆90Updated last week
• nf-core / differentialabundance
  Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq
  ☆56Updated last week
• BUStools / bustools
  Tools for working with BUS files
  ☆90Updated last week
• urmi-21 / pyrpipe
  Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
  ☆80Updated 3 years ago
• saezlab / transcriptutorial
  This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL
  ☆55Updated last year
• gatk-workflows / gatk4-rnaseq-germline-snps-indels
  Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools
  ☆66Updated 3 years ago
• Novartis / easyTrackHubs
  This package provides a function to reformat lists of genome coverage files, such as bigWig of bam files, into the directory structure of…
  ☆27Updated 4 months ago
• tavareshugo / tutorial_DESeq2_contrasts
  ☆54Updated 4 months ago
• alexfields / ORF-RATER
  Regression-based annotation of protein-coding sequences from ribosome profiling data
  ☆29Updated 4 years ago
• parklab / ShatterSeek
  ☆65Updated last year
• AAlhendi1707 / countToFPKM
  Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)
  ☆61Updated 3 years ago
• broadinstitute / 2020_scWorkshop
  Code and data repository for the 2020 physalia course on single cell RNA sequencing.
  ☆55Updated 4 years ago
• WCSCourses / SingleCell_23
  Hands-on training on the latest methodologies and applications for the analysis of nucleic acids from eukaryotic single cells
  ☆16Updated last month
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆54Updated 2 years ago
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆43Updated 8 months ago
• tobiasrausch / ATACseq
  Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
  ☆74Updated last year