latch-verified / bulk-rnaseq
Bulk RNA-seq analysis.
☆34Updated last year
Alternatives and similar repositories for bulk-rnaseq:
Users that are interested in bulk-rnaseq are comparing it to the libraries listed below
- coding exercise using TCGA immune infiltration data☆45Updated last year
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆60Updated last week
- Bioinformatics one-liner for 100 days☆47Updated last year
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆46Updated 2 years ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated last week
- Estimation of Promoter Activity from RNA-Seq data☆53Updated 3 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆74Updated 3 years ago
- RNAseq pipeline based on snakemake☆25Updated 2 years ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆78Updated this week
- ☆26Updated last year
- EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment☆56Updated last year
- Tip and tricks for BAM files☆85Updated 6 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 2 months ago
- A continually expanding collection of RNA-seq tools☆48Updated 7 months ago
- ☆53Updated last week
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆44Updated last year
- An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM fil…☆11Updated 3 years ago
- Analysis pipeline for the GUIDE-seq assay.☆24Updated last week
- An R interface to the MEME Suite☆50Updated 7 months ago
- Check strandedness of RNA-Seq fastq files☆123Updated 2 years ago
- Publication quality NGS track plotting☆111Updated 2 years ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆101Updated 5 months ago
- ☆27Updated last year
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆112Updated 3 months ago
- A small-RNA sequencing analysis pipeline☆84Updated last week
- From RNA-seq raw reads to enriched pathways by DEGs☆32Updated last year
- R tools for Agilent electrophoresis data☆45Updated last year
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆67Updated last month
- Quantification of transposable element expression using RNA-seq☆69Updated last year
- Preprocesses and Aligns Run-On Sequencing (PRO/GRO/ChRO-seq) data from Single-Read or Paired-End Illumina Sequencing☆27Updated 4 months ago