laminlabs / nbprojectLinks
Light-weight Jupyter notebook tracker.
☆34Updated last month
Alternatives and similar repositories for nbproject
Users that are interested in nbproject are comparing it to the libraries listed below
Sorting:
- Shadow objects for AnnData and MuData (experimental)☆12Updated 3 months ago
- Python bindings to and Jupyter Notebook+Lab integration for the HiGlass viewer☆59Updated last month
- Fit generalized linear models in python.☆27Updated 2 years ago
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆10Updated last week
- Registries for biological entities, coupled to public ontologies.☆15Updated this week
- requirements, examples, and tests for expression matrix file formats☆22Updated 6 years ago
- a minimal, scriptable genome browser for python☆51Updated 5 months ago
- Multimodal Data (.h5mu) implementation for Python☆98Updated last week
- Utilities for large scale distributed single cell data processing☆24Updated 3 weeks ago
- Multi-omics factor analysis v2☆45Updated 7 months ago
- Build contrasts for models defined with formulaic☆12Updated last week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆27Updated last week
- Legend made easy for matplotlib☆28Updated last week
- Slides and Notebooks for scverse 2024☆17Updated 8 months ago
- Convert bioinformatics file formats to Zarr☆35Updated this week
- Python API and Jupyter widget for Vitessce☆46Updated 2 weeks ago
- A flexible and extensible API for annotated 2D matrix data stored in multiple underlying formats.☆74Updated 2 weeks ago
- Genomic Features in Python from BioConductor's AnnotationHub☆21Updated last week
- A performant scientific image visualization system.☆35Updated last week
- Automatically annotate cell types, consistently across samples.☆13Updated last month
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆15Updated 2 years ago
- WebGL-based viewer for spatially-resolved transcriptomics data☆26Updated 2 years ago
- Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)☆23Updated this week
- Bam to Pandas DataFrame, quickly☆13Updated 3 weeks ago
- Spatial Transcriptomics Dashboard☆27Updated last year
- Partial reimplementation of bcftools for VCF Zarr☆14Updated this week
- A visual exploration and hypothesis testing tool for 3D genomics☆13Updated last year
- A Jupyter wrapper for the igv.js library (representation of genomic data)☆26Updated 4 years ago
- 𝒫robabilistic modeling of RNA velocity ⬱☆47Updated this week
- FA2021 Bootcamp course website for the incoming cohort of the Bioinformatics & Systems Biology Ph.D. program☆19Updated 3 years ago