Alternatives and similar repositories for wsi-tile-cleanup

Users that are interested in wsi-tile-cleanup are comparing it to the libraries listed below

• lucasrla / wsi-preprocessing
  Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning
  ☆55Updated last year
• qinghezeng / Histo2GeneSignatures
  Artificial Intelligence predicts immune and inflammatory gene signatures directly from hepatocellular carcinoma histology images
  ☆20Updated last year
• KatherLab / HIA
  Histopathology Image Analysis
  ☆92Updated 2 years ago
• wenqi006 / SlideGraph
  ☆56Updated 3 years ago
• simongraham / hovernet_inference
  HoVer-Net inference code for simultaneous nuclear segmentation and classification
  ☆69Updated 2 years ago
• huangzhii / IMPRESS
  ☆20Updated 2 years ago
• DIAGNijmegen / pathology-hooknet
  ☆63Updated 11 months ago
• PathologyDataScience / HiPS
  Histomic Prognostic Signature (HiPS): A population-level computational histologic signature for invasive breast cancer prognosis
  ☆32Updated last year
• DataX-JieHao / PAGE-Net
  A biologically interpretable integrative deep learning model that integrates PAthological images and GEnomic data
  ☆18Updated 5 years ago
• DIAGNijmegen / pathology-whole-slide-data
  A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
  ☆105Updated 9 months ago
• smujiang / WSITools
  Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for dee…
  ☆56Updated 9 months ago
• vqdang / H2T
  ☆36Updated 2 years ago
• KatherLab / marugoto
  Tools to build deep learning pipelines.
  ☆109Updated 10 months ago
• YashSharma / C2C
  Implementation of Cluster-to-Conquer: A Framework for End-to-End Multi-Instance Learning for Whole Slide Image Classification approach.
  ☆62Updated 3 years ago
• kmboehm / orpheus
  ☆15Updated 6 months ago
• SBU-BMI / quip_cancer_segmentation
  ☆17Updated 3 years ago
• agentdr1 / LA_MIL
  Implementation of LA_MIL, Local Attention Graph-based Transformer for WSIs, PyTorch
  ☆24Updated last year
• uta-smile / DeepAttnMISL
  Contains codes of DeepAttnMISL in MEDIA'20
  ☆58Updated 4 years ago
• AdalbertoCq / Histomorphological-Phenotype-Learning
  Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…
  ☆71Updated 7 months ago
• taliq / TEA-graph
  First commit
  ☆63Updated 3 years ago
• KatherLab / end2end-WSI-preprocessing
  End-to-end pipeline to go from raw H&E slides to normalised extracted features for training
  ☆27Updated last year
• peng-lab / HistoBistro
  Weakly-supervised learning pipeline for histopathology images. Publications: Biomarker prediction in colorectal cancer (CRC)
  ☆81Updated last year
• MaryamHaghighat / PathProfiler
  Pipeline for computational pathology
  ☆38Updated last year
• DIAGNijmegen / pathology-he-auto-augment
  H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.
  ☆57Updated 2 years ago
• AGFoersch / MultiStainDeepLearning
  Code from Foersch et al. (Under Construction / Development)
  ☆37Updated 2 years ago
• KatherLab / cancer-metadata
  machine-readable information for the TCGA dataset, mirrored from other sources
  ☆20Updated 3 years ago
• Cassie07 / Review_Molecular_profile_prediction_GNN
  [The Lancet Digital Health, MICCAI2020 Oral] The official code of "Spatially-aware Graph Neural Networks and Cross-level Molecular Profil…
  ☆24Updated last year
• TissueImageAnalytics / TILAb-Score
  This repository contains the implementation of TILAb-score as described in the original paper.
  ☆18Updated 5 years ago
• choosehappy / QuPathGeoJSONImportExport
  Coincides with blogpost for using geojson and shapely
  ☆33Updated 4 years ago
• smujiang / Re-stained_WSIs_Registration
  Re-stained whole slide image alignment
  ☆35Updated last year