okunator / cellseg_gsontoolsLinks
Feature extraction from GEOJson nuclei and tissue segmentation maps
☆16Updated 5 months ago
Alternatives and similar repositories for cellseg_gsontools
Users that are interested in cellseg_gsontools are comparing it to the libraries listed below
Sorting:
- ☆24Updated 7 months ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆62Updated last year
- Accessible and interoperable whole slide image analysis☆164Updated last week
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆32Updated 5 months ago
- Multiple-choice microscopy pipeline☆143Updated last week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated 6 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 3 weeks ago
- Integrated pipeline for multiplexed image analysis☆99Updated 8 months ago
- multimodal whole slide image registration in a graph structure☆96Updated last year
- ☆12Updated 8 months ago
- ☆35Updated last year
- ☆66Updated 9 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆46Updated last year
- An introduction to deepcell and deep learning☆154Updated last year
- The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …☆19Updated 7 months ago
- version 1 scripts for CODA☆57Updated last year
- ☆35Updated 3 weeks ago
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆11Updated 2 years ago
- Interactive visualization of spatial omics data☆73Updated last week
- ☆197Updated 3 weeks ago
- Train a model to predict gene expression from histology slides.☆109Updated 3 years ago
- ☆39Updated last year
- ☆56Updated 9 months ago
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆36Updated 3 years ago
- Piecewise alignment for layers of mosaics☆29Updated 2 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- Spatial Single-Cell Analysis Toolkit☆104Updated 4 months ago
- rna2seg☆17Updated 6 months ago
- ☆45Updated 8 months ago