Feature extraction from GEOJson nuclei and tissue segmentation maps
☆19Jun 23, 2025Updated last year
Alternatives and similar repositories for cellseg_gsontools
Users that are interested in cellseg_gsontools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Poisson scRNA Integration of Mixed Unknown Signals☆11Oct 7, 2024Updated last year
- ☆11Mar 1, 2026Updated 6 months ago
- Encoder-Decoder Cell and Nuclei segmentation models☆108Jul 15, 2026Updated 2 months ago
- Python tools for creating and manipulating OME-TIFF multi-resolution pyramid images.☆18Sep 17, 2026Updated last week
- Clinical oncology tumor board decision support system made by the Decider project.☆16Apr 22, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Interpretable Analysis of Histological WSIs☆19Jan 30, 2026Updated 7 months ago
- QuPath extension to work with images through OMERO's web API☆10Feb 10, 2026Updated 7 months ago
- Highly accurate prediction of single-cell spatial transcriptomics from histology images☆33Updated this week
- ☆16Jan 7, 2025Updated last year
- ☆22Jul 21, 2025Updated last year
- ☆18Mar 31, 2024Updated 2 years ago
- ViraPipe is distributed Apache Spark based metagenome analytics pipeline for scalable detection of pathogens from NGS data☆16Jul 3, 2018Updated 8 years ago
- ☆35Mar 30, 2025Updated last year
- CEll spatial Organization-based graph convolutional network☆28Feb 3, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- A package to simplify common tasks one might perform when interacting with The Cancer Imaging Archive (TCIA) via Python.☆29Jul 28, 2026Updated last month
- NuLite - Lightweight and Fast Model for Nuclei Instance Segmentation and Classification☆37Jan 19, 2026Updated 8 months ago
- Raw format to OME-TIFF converter☆58Sep 3, 2026Updated 3 weeks ago
- BIRDS plug-in on Fiji and attached jar package☆23Oct 7, 2021Updated 4 years ago
- Preprocessing module for large histological images☆21Jun 16, 2023Updated 3 years ago
- [arXiv '24] Efficient Cell Nuclei Instance Segmentation with Large Convolution Kernels☆48Aug 28, 2024Updated 2 years ago
- ☆101Jul 7, 2026Updated 2 months ago
- Read FASTA files indexed with .fai indexes. Also supports BGZIP+.gzi☆11Sep 17, 2026Updated last week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆23Jan 5, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- kmdata: A Database of Reconstructed Individual Patient Level Data from 153 Oncology Clinical Trials☆15May 27, 2025Updated last year
- A transformer-based weakly supervised computational pathology method for clinical-grade diagnosis and molecular state revelation of gliom…☆39Dec 11, 2024Updated last year
- Analyzing cellular niches in spatial transcriptomics data☆38Nov 18, 2024Updated last year
- DAS-MIL: Distilling Across Scales for MILClassification of Histological WSIs☆68Nov 29, 2024Updated last year
- Simple modern, small, zero dependency zip library for browser and node based JavaScript☆17Apr 3, 2026Updated 5 months ago
- xMIL: Insightful Explanations for Multiple Instance Learning in Histopathology☆40Aug 25, 2026Updated last month
- The implement for Comparison Detector: Convolutional Neural Networks for Cervical Cell Detection in the Limited-data Scenario.☆13Sep 6, 2022Updated 4 years ago
- A visualization grammar and GPU-accelerated toolkit for genomic data☆211Updated this week
- Code for the First Place Solution in OCELOT 2023: Cell Detection from Cell-Tissue Interaction☆11Sep 11, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆11Oct 21, 2023Updated 2 years ago
- CHANGE-seq analysis pipeline☆12Sep 14, 2026Updated 2 weeks ago
- ☆17Aug 13, 2025Updated last year
- This is the official code of the paper "Nuclei Segmentation with Point Annotations from Pathology Images via Self-Supervised Learning and…☆21Jan 9, 2024Updated 2 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆36Aug 28, 2026Updated last month
- ☆29Apr 4, 2021Updated 5 years ago
- ☆18Nov 16, 2023Updated 2 years ago