okunator / cellseg_gsontools
Feature extraction from GEOJson nuclei and tissue segmentation maps
☆14Updated 9 months ago
Alternatives and similar repositories for cellseg_gsontools
Users that are interested in cellseg_gsontools are comparing it to the libraries listed below
Sorting:
- GrandQC tool for tissue detection and quality control in pathology☆46Updated 2 months ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆54Updated last year
- ☆61Updated 3 months ago
- Poisson scRNA Integration of Mixed Unknown Signals☆11Updated 7 months ago
- Encoder-Decoder Cell and Nuclei segmentation models☆91Updated last week
- ☆32Updated last month
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆60Updated 3 months ago
- version 1 scripts for CODA☆44Updated last year
- List of pathology feature extractors and foundation models☆123Updated 3 months ago
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆35Updated 3 months ago
- Integrated pipeline for multiplexed image analysis☆87Updated last month
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆30Updated 3 months ago
- comseg☆19Updated 3 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆66Updated last year
- Her2 Breast Cancer Project☆73Updated 2 years ago
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆76Updated 4 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆54Updated this week
- ☆15Updated last year
- Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning☆76Updated 6 months ago
- A tool for rapidly labeling objects using deep learning feature embedding☆32Updated 9 months ago
- A pan-cancer platform for mutation prediction from routine histology☆68Updated 3 years ago
- Piecewise alignment for layers of mosaics☆24Updated last week
- ☆40Updated 3 years ago
- Deep learning on histopathology images.☆120Updated 3 years ago
- First commit☆61Updated 2 years ago
- multimodal whole slide image registration in a graph structure☆85Updated 10 months ago
- ☆130Updated 4 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆42Updated 10 months ago
- A vision language model for gigapixel whole slide images in histopathology☆41Updated 7 months ago
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆29Updated last month