kyleam / snakemake-mode
[MIRROR] Emacs support for Snakemake
☆35Updated 2 months ago
Alternatives and similar repositories for snakemake-mode:
Users that are interested in snakemake-mode are comparing it to the libraries listed below
- Emacs major mode for Nextflow☆20Updated 3 months ago
- Response to blog post about Salmon☆37Updated 7 years ago
- ☆16Updated last year
- A Github action for running a Snakemake workflow☆58Updated 2 weeks ago
- A Pedantic FASTA Parser and Tool Set☆14Updated 5 years ago
- Introduction to Snakemake for Bioinformatics☆19Updated last week
- Flexible omics pipeline☆18Updated 9 months ago
- Documentation of the Snakemake-Profiles project.☆53Updated 3 years ago
- Access nextflow variables from python scripts or notebooks☆21Updated 4 years ago
- Manager for multi-container computing environments☆24Updated 6 months ago
- python wrapper to dpryan79's bigwig library using cffi☆19Updated 8 years ago
- Color DNA/RNA bases in terminal output☆21Updated 7 years ago
- Snakemake profile for the (Sun) Grid Engine queueing system☆17Updated last year
- Snakemake profile for running jobs on an LSF cluster☆36Updated 8 months ago
- Implementation of the treeSeg algorithm as an R package.☆14Updated 3 years ago
- multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.☆10Updated 3 years ago
- Rapid and robust analysis of RNA-Seq experiments.☆32Updated 9 years ago
- Author academic documents in markdown☆12Updated 11 months ago
- A template for standard compliant snakemake-workflows☆95Updated last year
- ☆22Updated last year
- Source code for SimBac, a bacterial genome simulator☆13Updated 7 months ago
- A short tutorial on getting started with Snakemake for workflow management☆51Updated 6 years ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- Snakemake tutorial materials☆18Updated 5 years ago
- Simple interface to BioMart (Python -> rpy2 -> R/BioConductor's biomaRt)☆17Updated 10 years ago
- CLI tool to verify workflow reproducibility☆16Updated last year
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- Utility programs to trim or sort Illumina reads with adapter sequences☆15Updated 11 years ago
- Automatic Packaging and Distribution of Bioinformatics Pipelines☆26Updated 7 years ago
- a wee tool for random access into BGZF files.☆84Updated 6 years ago