Alternatives and similar repositories for snakemake-mode:

Users that are interested in snakemake-mode are comparing it to the libraries listed below

• edmundmiller / nextflow-mode
  Emacs major mode for Nextflow
  ☆20Updated 2 weeks ago
• salmonteam / SalmonBlogResponse
  Response to blog post about Salmon
  ☆37Updated 7 years ago
• cschin / multi-tabix
  multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.
  ☆10Updated 3 years ago
• kloetzl / pfasta
  A Pedantic FASTA Parser and Tool Set
  ☆14Updated 4 years ago
• Snakemake-Profiles / doc
  Documentation of the Snakemake-Profiles project.
  ☆52Updated 2 years ago
• Snakemake-Profiles / sge
  Snakemake profile for the (Sun) Grid Engine queueing system
  ☆16Updated last year
• InscriptaLabs / BioCantor
  ☆21Updated last year
• vsbuffalo / snakemake-tutorial
  Snakemake tutorial materials
  ☆17Updated 4 years ago
• tanghaibao / trimReads
  Utility programs to trim or sort Illumina reads with adapter sequences
  ☆15Updated 11 years ago
• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆56Updated last week
• daler / biomartpy
  Simple interface to BioMart (Python -> rpy2 -> R/BioConductor's biomaRt)
  ☆17Updated 10 years ago
• tbrown91 / SimBac
  Source code for SimBac, a bacterial genome simulator
  ☆13Updated 4 months ago
• Snakemake-Profiles / pbs-torque
  ☆16Updated last year
• epruesse / ymp
  Flexible omics pipeline
  ☆18Updated 6 months ago
• clintval / cvbio
  Artisanal 🤣 bioinformatics tools and pipelines in Scala
  ☆20Updated 5 years ago
• kcleal / superintervals
  Fast interval intersection library
  ☆35Updated this week
• merlebehr / treeSeg
  Implementation of the treeSeg algorithm as an R package.
  ☆14Updated 2 years ago
• COMBINE-lab / rainbowfish
  A succinct colored dBG representation
  ☆12Updated 6 years ago
• seandavi / GFFutils
  Convert, explore, and manipulate GFF and GTF files (used in bioinformatics) using a sqlite-based approach
  ☆35Updated 14 years ago
• lh3 / klib.nim
  Experimental getopt, gzip reader, FASTA/Q parser and interval queries in nim-lang
  ☆32Updated 4 years ago
• COMBINE-lab / shoal
  Improved multi-sample transcript abundance estimates using adaptive priors
  ☆20Updated 6 years ago
• percyfal / snakemake-rules
  Library of snakemake rules.
  ☆12Updated 6 years ago
• carpentries-incubator / snakemake-novice-bioinformatics
  Introduction to Snakemake for Bioinformatics
  ☆19Updated this week
• TGAC / RAMPART
  A configurable de novo assembly pipeline
  ☆28Updated 8 years ago
• databio / AIList
  Augmented interval list (AIList): a novel data structure for efficient genomic interval search
  ☆21Updated 2 years ago
• databio / bulker
  Manager for multi-container computing environments
  ☆24Updated 3 months ago
• mpieva / mapAD
  An aDNA aware short-read mapper
  ☆19Updated last month
• harrispopgen / mushi
  [mu]tation [s]pectrum [h]istory [i]nference
  ☆25Updated 3 weeks ago
• xguse / cookiecutter-snakemake-analysis-pipeline
  A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.
  ☆16Updated 8 years ago
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆84Updated 6 years ago