[MIRROR] Emacs support for Snakemake
☆35Feb 4, 2025Updated last year
Alternatives and similar repositories for snakemake-mode
Users that are interested in snakemake-mode are comparing it to the libraries listed below
Sorting:
- Emacs major mode for Nextflow☆24Jan 11, 2025Updated last year
- Manage the visualization of large amounts of other people's [often messy] genomics data☆18Apr 10, 2016Updated 9 years ago
- SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.☆23Aug 19, 2017Updated 8 years ago
- Simulate GWAS data from an arbitrary DAG☆11Oct 29, 2025Updated 4 months ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Apr 1, 2024Updated last year
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Sep 20, 2017Updated 8 years ago
- Notebooks which are dedicated examples for TileDB☆19Jan 27, 2022Updated 4 years ago
- A Rust library for building modular, fast and compact indexes over genomic data☆12Nov 22, 2023Updated 2 years ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆42Oct 17, 2023Updated 2 years ago
- ☆13May 2, 2018Updated 7 years ago
- Let someone else take care of keeping up to date tangled/woven versions of your Org files for public consumption.☆31Oct 8, 2022Updated 3 years ago
- Code and analysis for the 1000 tools paper☆11Nov 12, 2021Updated 4 years ago
- The uncompromising Snakemake code formatter☆183Updated this week
- A Snakemake executor plugin for submitting jobs to a SLURM cluster☆48Mar 13, 2026Updated last week
- Extends miniwdl to run workflows on AWS Batch & EFS☆22Feb 5, 2024Updated 2 years ago
- Open Targets Genetics UI☆15Jan 31, 2025Updated last year
- ☆13Jul 28, 2023Updated 2 years ago
- python wrapper to dpryan79's bigwig library using cffi☆19May 13, 2016Updated 9 years ago
- Simple HTML package documentation☆12Jan 14, 2026Updated 2 months ago
- FastK based version of Merqury☆32Jan 19, 2026Updated 2 months ago
- A tool for merging large BWTs☆24Nov 26, 2020Updated 5 years ago
- A Python Package for Mendelian Randomization Analysis☆18Sep 8, 2017Updated 8 years ago
- Identify cell types and pathways affected by genetic risk loci.☆36Feb 29, 2024Updated 2 years ago
- Imputation of parental genotypes, inference of sibling IBD segments, family based GWAS, and polygenic score analyses.☆38Feb 9, 2026Updated last month
- Language support and snippets for Snakemake workflows (Snakefile, *.smk) for Visual Studio Code and Apache Theia.☆23Mar 11, 2026Updated last week
- The snakemake interface, currently works like a notebook (under development)☆20Mar 12, 2026Updated last week
- Single-header C++ library for fast/low-memory VCF (Variant Call Format) parsing.☆19Dec 2, 2025Updated 3 months ago
- Radix sort implementation for sorting by scalar keys (integers, floats, chars, bools)☆25Aug 19, 2024Updated last year
- Code for performing PCA followed by CCA☆18Dec 2, 2018Updated 7 years ago
- Faster manipulation of dendrogram objects in R.☆15May 22, 2015Updated 10 years ago
- Source code of Statistical Computing 2 website☆12Feb 6, 2023Updated 3 years ago
- CloudFlare Dynamic DNS Client☆17Jun 29, 2024Updated last year
- Rough and dirty web Mud game - using SockJS and Django☆21Nov 3, 2011Updated 14 years ago
- ☆13Feb 29, 2024Updated 2 years ago
- Flexible omics pipeline☆17Oct 16, 2025Updated 5 months ago
- deploy a snakemake pipeline directly from version control (under development)☆25Mar 12, 2026Updated last week
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Jul 9, 2021Updated 4 years ago
- Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)☆14Nov 25, 2025Updated 3 months ago
- Onboarding materials for the Greene Lab☆32Feb 10, 2026Updated last month