Alternatives and similar repositories for snakemake-mode

Users that are interested in snakemake-mode are comparing it to the libraries listed below

• edmundmiller / nextflow-mode
  Emacs major mode for Nextflow
  ☆24Updated last year
• salmonteam / SalmonBlogResponse
  Response to blog post about Salmon
  ☆37Updated 8 years ago
• databio / sciquill
  Author academic documents in markdown
  ☆12Updated 3 months ago
• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆62Updated last month
• databio / bulker
  Manager for multi-container computing environments
  ☆25Updated last year
• cschin / multi-tabix
  multi_tbx: a simple tool for indexing VCF files and extract variant records for variant data stored in multiple VCF files.
  ☆10Updated 4 years ago
• epruesse / ymp
  Flexible omics pipeline
  ☆17Updated 3 months ago
• clintval / cvbio
  Artisanal 🤣 bioinformatics tools and pipelines in Scala
  ☆20Updated 6 years ago
• jeromekelleher / python-c-api-demo
  A demo of the Python C API for CodeMonkeys
  ☆20Updated 7 years ago
• Snakemake-Profiles / pbs-torque
  ☆17Updated 2 years ago
• statgen / savvy
  Interface to various variant calling formats.
  ☆31Updated last year
• chapmanb / bcbio.variation
  Toolkit to analyze genomic variation data, built on the GATK with Clojure
  ☆66Updated 10 years ago
• ctb / 2019-snakemake-ucdavis
  Intro to workflows for efficient automated data analysis, using snakemake.
  ☆32Updated 6 years ago
• dcjones / isolator
  Rapid and robust analysis of RNA-Seq experiments.
  ☆32Updated 9 years ago
• koelling / dnacol
  Color DNA/RNA bases in terminal output
  ☆21Updated 8 years ago
• brentp / bw-python
  python wrapper to dpryan79's bigwig library using cffi
  ☆19Updated 9 years ago
• xguse / cookiecutter-snakemake-analysis-pipeline
  A cookiecutter template that reflects my favored structure for setting up Snakemake-based analysis pipelines.
  ☆16Updated 9 years ago
• leipzig / snakemake-example
  RNA-Seq Snakemake example with Jekyll homepage creation
  ☆20Updated 11 years ago
• carpentries-incubator / snakemake-novice-bioinformatics
  Introduction to Snakemake for Bioinformatics
  ☆22Updated this week
• cozygene / refactor
  ☆25Updated 6 years ago
• stephenslab / effective-computing
  Effective Computing—Resources for Computational Biologists
  ☆27Updated 5 years ago
• merlebehr / treeSeg
  Implementation of the treeSeg algorithm as an R package.
  ☆14Updated 3 years ago
• dpryan79 / Misc
  Misc. utilities
  ☆11Updated 6 years ago
• rossibarra / CV
  Curriculum Vitae
  ☆14Updated last week
• Snakemake-Profiles / doc
  Documentation of the Snakemake-Profiles project.
  ☆55Updated 3 years ago
• gmcvicker / draw_genes
  A flexible python program for generating figures from regions of the genome.
  ☆13Updated 6 years ago
• kloetzl / biozsh
  the z in bioinformatics
  ☆33Updated 2 years ago
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆86Updated 7 years ago
• gkichaev / PAINTOR_V2.1
  ☆22Updated 9 years ago
• Midnighter / nextflow-utility-services
  A collection of Groovy classes that provide utility services to nextflow pipelines.
  ☆13Updated 3 years ago