databio / bulker
Manager for multi-container computing environments
☆24Updated 6 months ago
Alternatives and similar repositories for bulker:
Users that are interested in bulker are comparing it to the libraries listed below
- ☆22Updated last year
- Documentation for PEP specification and all PEPkit software☆9Updated 2 weeks ago
- Useful tools for working with Salmon output☆37Updated 4 years ago
- Calculate and plot distributions of genomic ranges☆26Updated this week
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 4 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 years ago
- Removing PCR duplicates for sequencing reads.☆14Updated 4 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Samwell: a python package for using genomic files... well☆20Updated 2 years ago
- bedtools-like functionality for interval sets in rust☆51Updated 8 months ago
- Fast sequencing data quality metrics☆26Updated 2 weeks ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago
- ☆11Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆12Updated last week
- Immuological gene typing and annotation for genome assembly☆35Updated last month
- A job submitter for Portable Encapsulated Projects☆22Updated last month
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆37Updated last year
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Sashimi plots for RNA-seq data using detected transcripts☆28Updated last month
- Nextflow workflow syntax highlighting and snippets for Sublime Text 4☆24Updated 3 months ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Structural Variant Prediction Viewer☆34Updated 7 years ago
- Structural variant (SV) analysis tools☆36Updated 9 months ago
- Tools for finding mobile element insertions from single-end datasets☆23Updated 5 years ago
- ☆29Updated 2 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago