databio / bulkerLinks
Manager for multi-container computing environments
☆25Updated 11 months ago
Alternatives and similar repositories for bulker
Users that are interested in bulker are comparing it to the libraries listed below
Sorting:
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 months ago
- bedtools-like functionality for interval sets in rust☆53Updated 2 months ago
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆28Updated 2 months ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 9 months ago
- Useful tools for working with Salmon output☆38Updated 5 years ago
- Project metadata manager for PEPs in Python☆37Updated last year
- Customer workshop materials☆18Updated 2 years ago
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Updated this week
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- ☆22Updated last year
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 7 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- sort genomic data☆36Updated 5 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 weeks ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Artisanal 🤣 bioinformatics tools and pipelines in Scala☆20Updated 5 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Fast FASTQ sample demultiplexing in Rust.☆65Updated 4 months ago
- Numerical Encoding for Human Genetic Variants☆42Updated 2 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Updated 4 years ago
- Calculate and plot distributions of genomic ranges☆26Updated 5 months ago
- Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)☆14Updated this week
- Fast sequencing data quality metrics☆28Updated 3 weeks ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆33Updated 4 months ago
- (WIP) best-practices workflow for rare disease☆62Updated last year