Alternatives and similar repositories for mRNAid

Users that are interested in mRNAid are comparing it to the libraries listed below

• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆44Updated 3 weeks ago
• Illumina / PrimateAI-3D
  ☆72Updated 2 months ago
• openvax / gtfparse
  Parsing tools for GTF (gene transfer format) files
  ☆125Updated 11 months ago
• vrmelo / SPLICE-q
  SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.
  ☆12Updated 2 years ago
• andrewrech / antigen.garnish
  ☆48Updated 3 years ago
• Illumina / PromoterAI
  ☆87Updated 2 months ago
• atc3 / maxquant_linux_guide
  A guide to running MaxQuant in Linux
  ☆35Updated 5 years ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆46Updated 2 years ago
• MathOnco / NeoPredPipe
  Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.
  ☆114Updated last year
• broadinstitute / depmap_omics
  What you need to process the Quarterly DepMap-Omics releases from Terra
  ☆125Updated last week
• crisprVerse / crisprDesign
  Comprehensive design of CRISPR gRNAs for nucleases and base editors
  ☆26Updated 2 months ago
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆73Updated last week
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆90Updated 3 months ago
• MoriarityLab / EditR
  EditR: an algorithm for simple and cost effective measurement of base editing by quantifying Sanger trace fluorescence
  ☆33Updated 2 years ago
• GuoBioinfoLab / CATT
  An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.
  ☆21Updated 2 months ago
• GfellerLab / PRIME
  PRedictor of IMmunogenic Epitopes
  ☆25Updated 4 months ago
• frankligy / SNAF
  Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing da…
  ☆52Updated 11 months ago
• tsailabSJ / guideseq
  Analysis pipeline for the GUIDE-seq assay.
  ☆29Updated 6 months ago
• qmarcou / IGoR
  IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:
  ☆52Updated last month
• Neurotechnology-at-ETH-Zurich / siRNA_Design
  Collection of tools to retrieve siRNA (small interfering RNA) candidate sequences targeting your gene of interest from popular siRNA desi…
  ☆16Updated 3 years ago
• gpp-rnd / rs3
  Package to Score Sequences using Rule Set 3
  ☆14Updated 2 months ago
• urmi-21 / pyrpipe
  Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.
  ☆84Updated 4 years ago
• patrickc01 / CRIS.py
  Analyze NGS data for CRISPR (or any engineered endonuclease) activity and screen for clones. Screen for NHEJ or multiple HDR events concu…
  ☆27Updated 2 years ago
• JamieHeather / stitchr
  Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info
  ☆64Updated 5 months ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆54Updated 5 years ago
• phageghost / python-genome-browser
  Tools for making plots of genomic datasets in a genome-browser-like format
  ☆33Updated last year
• klarman-cell-observatory / Riboseq-nuORFs
  ☆11Updated 6 years ago
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆16Updated 4 months ago
• snugel / cas-offinder
  An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.
  ☆95Updated 3 years ago
• bm2-lab / pTuneos
  pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data
  ☆38Updated 4 years ago