Alternatives and similar repositories for DeMaSk

Users that are interested in DeMaSk are comparing it to the libraries listed below

• esbgkannan / chumby
  A package for making tree-based visualizations for embedding vectors
  ☆10Updated 2 years ago
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆21Updated last year
• sbl-sdsc / mmtf-genomics
  Methods for mapping genomic data onto 3D protein structure.
  ☆28Updated 3 years ago
• hzi-bifo / epitope-prediction
  ☆18Updated last year
• jurgjn / af-protein-universe
  Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…
  ☆27Updated 2 years ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆31Updated 2 years ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• nleroy917 / optipyzer
  Multi-Species Codon Optimization Engine
  ☆27Updated 4 months ago
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆36Updated 4 years ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆52Updated last year
• wrf / pdbcolor
  Python code to color a PDB structure based on parameters from a multiple sequence alignment
  ☆32Updated 2 years ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆26Updated last month
• Rostlab / bindPredict
  Prediction of binding residues for metal ions, nucleic acids, and small molecules.
  ☆34Updated 2 months ago
• psipred / psipred
  PSIPRED Protein Secondary Structure Predictor
  ☆58Updated 4 months ago
• OATML / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆65Updated 3 years ago
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆52Updated 3 years ago
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year
• SBRG / Protein_ML
  Machine learning workflows for analyzing high-throughput protein data
  ☆26Updated 8 years ago
• kiharalab / GO2Sum
  GO2Sum is a deep learning based summarizer that generates human-readable summaries for GO term annotations made by protein function predi…
  ☆16Updated last year
• Rostlab / EAT
  Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…
  ☆37Updated 2 months ago
• normandavey / AlphaFold2-IDR-complex-prediction
  ☆39Updated 4 years ago
• ProteinQure / cbh21-protein-solubility-challenge
  Template with code & dataset for the "Structural basis for solubility in protein expression systems" challenge at the Copenhagen Bioinfor…
  ☆22Updated 4 years ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆52Updated last month
• MedChaabane / deepRAM
  End-to-end deep learning toolkit for predicting protein binding sites and motifs.
  ☆45Updated 6 years ago
• jwillis0720 / sadie
  The Complete Python Antibody Library
  ☆24Updated last week
• DasLab / RiboGraphViz
  Visualize global properties of large RNAs using GraphViz force-directed layout.
  ☆23Updated 2 years ago
• harmslab / topiary
  Python framework for doing ancestral sequence reconstruction
  ☆41Updated last year
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆28Updated 2 years ago
• cusbg / MolArt
  MOLeculAR structure annoTator
  ☆33Updated last year