knausb / vcfR_documentationLinks
Documentation for vcfR
☆11Updated 6 months ago
Alternatives and similar repositories for vcfR_documentation
Users that are interested in vcfR_documentation are comparing it to the libraries listed below
Sorting:
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 6 months ago
- a set of NGS pipelines☆24Updated last week
- An R Package based on JavaScript libraries for Visualization of Interactive Circos Plot☆28Updated 3 years ago
- ☆23Updated 4 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 9 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- Snakemake workflow for Illumina RNA-sequencing experiments - extract population genomic signals from RNA-Seq data☆18Updated 8 months ago
- interactive plots for differential expression analysis☆34Updated 5 months ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- Transcriptome-wide network☆16Updated 6 years ago
- Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods☆16Updated 5 months ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆28Updated 2 years ago
- Integrative analysis of structural variations.☆40Updated last year
- workshop website on readthedocs☆21Updated 2 months ago
- BrumiR: A toolkit for de novo discovery of microRNAs from sRNA-seq data.☆12Updated 3 years ago
- ☆17Updated last year
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Updated 8 months ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆37Updated 4 years ago
- ☆20Updated 3 years ago
- ☆34Updated 3 weeks ago
- ☆10Updated 4 years ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- Long read to rMATS☆32Updated 2 years ago
- ☆13Updated 3 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- ☆23Updated last month
- Interactive eQTL visualizations☆13Updated 2 years ago
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated 8 months ago
- RNA editing quantification in deep transcriptome data☆16Updated 4 months ago