Shicheng-Guo / AnnotationDatabaseLinks
annotation database for human genetics, genomics and epigenomics
☆19Updated 5 years ago
Alternatives and similar repositories for AnnotationDatabase
Users that are interested in AnnotationDatabase are comparing it to the libraries listed below
Sorting:
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆98Updated 4 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆75Updated last year
- R package containing useful functions for mutational signature analysis☆84Updated last week
- cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data☆71Updated 3 years ago
- SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational pattern…☆50Updated this week
- ☆44Updated 7 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆52Updated 3 years ago
- ☆72Updated 2 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆72Updated 4 years ago
- Automate Absolute Copy Number Calling using 'ABSOLUTE' package☆40Updated last year
- ☆78Updated 6 months ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- reproduce the functional enrichment analysis presented in GTEx paper using clusterProfiler/DOSE☆33Updated 4 years ago
- ☆68Updated this week
- ☆74Updated 4 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆62Updated 4 years ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated last week
- SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations o…☆111Updated this week
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Clinical interpretation of somatic mutations in cancer☆49Updated 8 months ago
- deconstructSigs☆143Updated 2 years ago
- Tumor Mutational Burden☆61Updated 2 months ago
- Mutational signature analysis for low statistics SNV data☆64Updated last year
- This repo has been archived, these workflows are still available in the GATK repository under the scripts directory. The workflows are al…☆77Updated 5 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆78Updated 4 months ago
- Battenberg R package for subclonal copynumber estimation☆91Updated 3 months ago
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆46Updated 2 years ago
- An R package to time somatic mutations☆64Updated 4 years ago
- An R package for inferring the subclonal architecture of tumors☆122Updated 2 years ago