krassowski / computational-notebooks-for-biomedical-researchLinks
NGSeminar on the use of Jupyter and R notebooks in biomedical research
☆13Updated 2 years ago
Alternatives and similar repositories for computational-notebooks-for-biomedical-research
Users that are interested in computational-notebooks-for-biomedical-research are comparing it to the libraries listed below
Sorting:
- Bioconductor package that makes BIG data pint-sized.☆21Updated last year
- ☆16Updated last week
- ☆29Updated 8 months ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- 📊 An R package of RNA-seq workflow☆16Updated 3 years ago
- ☆32Updated last year
- ☆21Updated 9 months ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆14Updated 2 months ago
- interactive plots for differential expression analysis☆32Updated last week
- Statistical power studies for multi-omics experiments.☆32Updated 5 months ago
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆22Updated this week
- Isoform-level functional RNA-Seq analysis 🧬☆25Updated 3 weeks ago
- Merge fastq files split over lanes☆20Updated 7 years ago
- ☆27Updated last year
- ☆13Updated 2 years ago
- Summer school course materials collection☆26Updated 6 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- methylR: a single shiny solution from sequencer data to pathway analysis☆12Updated 7 months ago
- Intro to workflows for efficient automated data analysis, using snakemake.☆32Updated 6 years ago
- Tutorial to reproduce the analysis of Peixoto et al. (2015)☆9Updated 9 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆22Updated 4 months ago
- a set of NGS pipelines☆24Updated this week
- Transcript quantification import with automatic metadata detection☆68Updated last month
- Interactive Differential Expression AnaLysis - DE made accessible and reproducible☆29Updated last month
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 7 years ago
- countsimQC - Compare characteristic features of count data sets☆27Updated 2 months ago
- R package for plotting 3D graphical visualization of multi-omics data.☆22Updated 3 years ago