krassowski / computational-notebooks-for-biomedical-researchLinks
NGSeminar on the use of Jupyter and R notebooks in biomedical research
☆13Updated 2 years ago
Alternatives and similar repositories for computational-notebooks-for-biomedical-research
Users that are interested in computational-notebooks-for-biomedical-research are comparing it to the libraries listed below
Sorting:
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆25Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- ☆29Updated 9 months ago
- interactive plots for differential expression analysis☆33Updated last month
- Transcript quantification import with automatic metadata detection☆68Updated last month
- An R for fast and flexible DNA methylation analysis☆33Updated last month
- Statistical power studies for multi-omics experiments.☆32Updated 6 months ago
- Bioconductor package that makes BIG data pint-sized.☆21Updated last year
- Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor☆23Updated last week
- Shiny GUI application for genomics meta-analysis☆22Updated 4 years ago
- An extension class of SummarizedExperiment to allow hierarchical structure on the row or column dimension☆14Updated 3 weeks ago
- Genomic data interpretation and visualization Workshop☆21Updated 3 weeks ago
- Explore the cancer relevance of your gene list☆51Updated 5 months ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆12Updated 2 years ago
- ☆16Updated last month
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- Differential Count Data Analysis Toolbox☆61Updated last year
- ☆32Updated last year
- Open-Source Software for Omic Data Analysis and Visualization☆35Updated last week
- Differential expression and allelic analysis, nonparametric statistics☆29Updated 7 months ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Best practice RNA-Seq analysis pipeline for reference-based RNA-Seq analysis☆40Updated 4 years ago
- ☆13Updated 2 years ago
- An automated pipe for reproducible RNA-seq analysis with the minimal efforts from researchers. You only need to provide the taxa name and…☆14Updated 3 years ago
- Accurate estimation and robust modelling of translation dynamics at codon resolution☆20Updated 8 years ago
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆14Updated 3 months ago
- 📊 An R package of RNA-seq workflow☆16Updated 3 years ago
- ☆29Updated last year
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆43Updated 3 years ago
- Toolbox package for organizing and working with TCGA data☆28Updated 3 weeks ago