Ａ user-friendly Python toolkit, which provides a comprehensive pipeline to easily explore the cohort-based mutational characterization for studying cancer genomics.
☆21Oct 27, 2022Updated 4 years ago
Alternatives and similar repositories for MutScape
Users that are interested in MutScape are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A python interface for the CIViC db application☆13Oct 5, 2026Updated last month
- Annotating principal splice isoforms☆19Nov 20, 2025Updated 11 months ago
- 16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.☆12Jan 15, 2021Updated 5 years ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 7 months ago
- Implementation of FACETS for Terra☆12Jan 20, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆45Aug 21, 2025Updated last year
- Detection and Visualization of Exon-Level Copy Number Variants in Targeted Next Generation Sequencing Data☆18Nov 26, 2021Updated 4 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Aug 24, 2022Updated 4 years ago
- cDriver R package for finding candidate driver genes in cancers☆18Jan 18, 2018Updated 8 years ago
- DolphinNext Tutorial documents☆16Jul 5, 2021Updated 5 years ago
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated last year
- Whole exome sequencing pipeline including advanced variant annotation features and automated PDF reporting.☆18Jan 29, 2026Updated 9 months ago
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆68Jun 30, 2026Updated 4 months ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆13Apr 16, 2026Updated 6 months ago
- Python function for TMB snake plots☆16Feb 12, 2026Updated 8 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆59Updated this week
- Cancer Predisposition Sequencing Reporter (CPSR)☆67Oct 24, 2026Updated last week
- ☆12Apr 25, 2024Updated 2 years ago
- RNA-seq data comprehensive data analysis toolbox☆20Oct 18, 2022Updated 4 years ago
- Structural variant pipeline☆18Jun 25, 2020Updated 6 years ago
- DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.☆12Nov 26, 2020Updated 5 years ago
- Computational identification of targets for CAR-T cell therapy in AML☆23Dec 25, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆18Aug 29, 2025Updated last year
- Trajectory Inference Based on SNP information.☆24Jun 19, 2024Updated 2 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆16Mar 6, 2024Updated 2 years ago
- Utilities repository to analyze single-cell data from https://www.nature.com/articles/s41467-018-07261-3.☆10Feb 7, 2020Updated 6 years ago
- Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis☆16Nov 13, 2024Updated last year
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆22Feb 14, 2023Updated 3 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆22Sep 17, 2026Updated last month
- ☆37Updated this week
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Oct 26, 2018Updated 8 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- REcombination BARcode detector.☆17Apr 2, 2024Updated 2 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆15Feb 14, 2021Updated 5 years ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆25Jul 11, 2021Updated 5 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆95Jun 6, 2025Updated last year
- Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …☆61Sep 17, 2024Updated 2 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Nov 13, 2023Updated 2 years ago
- Python Bootcamp☆15Aug 4, 2020Updated 6 years ago