Ａ user-friendly Python toolkit, which provides a comprehensive pipeline to easily explore the cohort-based mutational characterization for studying cancer genomics.
☆21Oct 27, 2022Updated 3 years ago
Alternatives and similar repositories for MutScape
Users that are interested in MutScape are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Jan 30, 2023Updated 3 years ago
- A python interface for the CIViC db application☆12Apr 23, 2026Updated last week
- Annotating principal splice isoforms☆18Nov 20, 2025Updated 5 months ago
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated last month
- cDriver R package for finding candidate driver genes in cancers☆18Jan 18, 2018Updated 8 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Detection and Visualization of Exon-Level Copy Number Variants in Targeted Next Generation Sequencing Data☆18Nov 26, 2021Updated 4 years ago
- Computational identification of targets for CAR-T cell therapy in AML☆21Dec 25, 2022Updated 3 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Aug 24, 2022Updated 3 years ago
- Whole exome sequencing pipeline including advanced variant annotation features and automated PDF reporting.☆17Jan 29, 2026Updated 3 months ago
- Implementation of FACETS for Terra☆12Jan 20, 2023Updated 3 years ago
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆67Dec 25, 2022Updated 3 years ago
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated last year
- CADD-SV – a framework to score the effect of structural variants☆18Updated this week
- Roslin is a reproducible and reusable workflow for Cancer Genomic Sequencing Analysis☆16Nov 13, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆11Apr 25, 2024Updated 2 years ago
- RNA-seq data comprehensive data analysis toolbox☆20Oct 18, 2022Updated 3 years ago
- ☆12Apr 16, 2026Updated 2 weeks ago
- Frequently used commands in bioinformatics☆58Oct 12, 2024Updated last year
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆44Aug 21, 2025Updated 8 months ago
- DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.☆12Nov 26, 2020Updated 5 years ago
- Joint normalization of two Hi-C matrices, visualization and detection of differential chromatin interactions. See multiHiCcompare for the…☆23Jun 4, 2023Updated 2 years ago
- DolphinNext Tutorial documents☆16Jul 5, 2021Updated 4 years ago
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Python function for TMB snake plots☆16Feb 12, 2026Updated 2 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Oct 26, 2018Updated 7 years ago
- BingleSeq - A user-friendly R package for Bulk and Single-cell RNA-Seq data analyses☆24Jul 11, 2021Updated 4 years ago
- A robust model for quantitative comparison of ChIP-Seq data sets.☆22May 18, 2020Updated 5 years ago
- CIViC is an open access, open source, community-driven web resource for Clinical Interpretation of Variants in Cancer☆32Updated this week
- REcombination BARcode detector.☆16Apr 2, 2024Updated 2 years ago
- Introme prioritises coding and noncoding splice-altering variants for clinical variant interpretation☆22Apr 28, 2026Updated last week
- Trajectory Inference Based on SNP information.☆24Jun 19, 2024Updated last year
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆22Feb 14, 2023Updated 3 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A preprocessing and QC pipeline for HiChIP data☆40Jul 11, 2022Updated 3 years ago
- Python Bootcamp☆14Aug 4, 2020Updated 5 years ago
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆21Aug 22, 2025Updated 8 months ago
- Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!☆15Jun 10, 2024Updated last year
- Copy Number Methods for Detection and Genome Wide Association Tests☆22Nov 4, 2024Updated last year
- A Shiny App for Interactive Multi-OMICS Cancer Data Visualization and analysis☆21Feb 14, 2024Updated 2 years ago
- Calculating Tumor microenvironment score☆29Jan 20, 2023Updated 3 years ago