Alternatives and similar repositories for MutScape

Users that are interested in MutScape are comparing it to the libraries listed below

• khuranalab / CompositeDriver
  Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers
  ☆15Updated 7 years ago
• elkebir-group / cnaviz
  ☆12Updated 2 years ago
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆52Updated this week
• AlexandrovLab / TMB_plotter
  Python function for TMB snake plots
  ☆16Updated 5 years ago
• caravagnalab / mobster
  Model-based tumour subclonal deconvolution using population genetics
  ☆33Updated 2 weeks ago
• Oshlack / MINTIE
  Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.
  ☆37Updated last year
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 4 years ago
• gagneurlab / FRASER-analysis
  Accompanying analysis code for the FRASER manuscript
  ☆26Updated 5 years ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆40Updated 3 years ago
• jiujiezz / tsnad
  Detecting somatic mutations and predicting tumor-specific neo-antigens
  ☆29Updated 4 years ago
• caravagnalab / CNAqc
  Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation
  ☆24Updated 2 months ago
• genemine / iread
  iread
  ☆25Updated 4 years ago
• elyadlezmi / RNA2CM
  Pipeline for the identification of cancer-related mutations from RNA-seq data
  ☆14Updated 4 years ago
• salbrec / seqQscorer
  ☆22Updated 3 months ago
• bioinform / ecTMB
  ☆18Updated 4 years ago
• beroukhim-lab / BISCUT-py3
  ☆12Updated last year
• flemingtonlab / SpliceTools
  ☆17Updated last year
• d3b-center / annoFuse
  Filter and prioritize fusion calls
  ☆20Updated last year
• NourMarzouka / multiclassPairs
  Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.
  ☆13Updated 2 years ago
• HTGenomeAnalysisUnit / nf-pipeline-regenie
  GWAS and rare variants tests at high speed using regenie
  ☆16Updated last month
• jsalignon / cactus
  Chromatin ACcessibility and Transcriptomics Unifying Software
  ☆17Updated last year
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆34Updated 6 months ago
• TRON-Bioinformatics / splice2neo
  R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes
  ☆14Updated 3 weeks ago
• cancer-genomics / reproduce_liver_final
  Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes
  ☆11Updated 3 years ago
• icbi-lab / NeoFuse
  NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.
  ☆19Updated 3 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆25Updated 4 months ago
• chess-genome / chess
  Comprehensive Human Expressed SequenceS
  ☆18Updated 5 months ago
• AmpliconSuite / AmpliconReconstructorOM
  Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data
  ☆19Updated 2 years ago
• umccr / umccrise
  DRAGEN Tumor/Normal workflow post-processing
  ☆25Updated 2 years ago