brunetlab / CelegansATACseqLinks
The code for Daugherty, et al 2017 - Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans
☆11Updated 8 years ago
Alternatives and similar repositories for CelegansATACseq
Users that are interested in CelegansATACseq are comparing it to the libraries listed below
Sorting:
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆31Updated last year
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 7 years ago
- R package to detect splicing QTLs (sQTLs)☆15Updated 4 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 8 years ago
- A small R package to make sequencing read coverage plots in R.☆40Updated last month
- HOT regions paper☆11Updated 6 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ☆16Updated 8 years ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- ☆23Updated 4 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆29Updated 2 years ago
- Allele-Specific Expression by Single-Cell RNA Sequencing☆29Updated 5 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- Published methods☆15Updated 9 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated 2 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 7 years ago
- RNA-Sequencing data differential expression analysis pipeline. Performs: genome coverage (via bedtools and HTSeq), generates Circos code …☆56Updated 13 years ago
- a set of NGS pipelines☆24Updated 2 weeks ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated 2 years ago
- RNA-seq workflow: differential transcript usage☆23Updated 2 years ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Updated 2 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago