kieshaprem / synthetic-contact-matrices
Updates to the synthetic contact matrices
☆36Updated last year
Related projects ⓘ
Alternatives and complementary repositories for synthetic-contact-matrices
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated 11 months ago
- The Flexible Epidemic Modeling Pipeline☆9Updated this week
- Inferring high-resolution human mixing patterns for disease modeling☆41Updated last year
- SEIR transmission model of COVID-19. Documentation at:☆50Updated 9 months ago
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- R package for deriving social mixing matrices from survey data.☆38Updated this week
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated last year
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated last year
- ☆19Updated last year
- ☆23Updated 3 years ago
- COVID-19 Scenario Modeling Hub☆63Updated 3 months ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆11Updated 2 years ago
- epidemia package☆47Updated 2 years ago
- European Covid-19 Forecast Hub.☆48Updated 3 weeks ago
- Basic Epidemic, Activity, and Response COVID-19 model☆31Updated 4 years ago
- ☆17Updated 3 years ago
- ☆36Updated 2 weeks ago
- A tool to estimate time varying instantaneous reproduction number during epidemics☆94Updated 2 months ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆115Updated this week
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 2 years ago
- Analysis code and data for COVID-19 age-specific clinical fraction☆22Updated 4 years ago
- Age-structured SEIR model for COVID-19 outbreak in Wuhan, China☆40Updated 4 years ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆15Updated 6 months ago
- R Package for individual based epidemiological models☆30Updated 2 months ago
- Bayesian SEIR model to estimate the effects of social-distancing on COVID-19☆28Updated 3 years ago
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆27Updated 3 years ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆15Updated this week
- Repository to the R package nowcaster, nowcasting with INLA☆18Updated 3 weeks ago
- Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Il…☆11Updated 3 weeks ago
- Modelling transmission dynamics of COVID-19, while accounting for presymptomatic infectiousness, time-varying ascertainment rates, transm…☆21Updated 4 years ago