amanda-minter / abc_RLinks
☆11Updated 4 years ago
Alternatives and similar repositories for abc_R
Users that are interested in abc_R are comparing it to the libraries listed below
Sorting:
- Updates to the synthetic contact matrices☆37Updated last year
- An R package for Bayes Linear emulation and history matching.☆16Updated 3 months ago
- Repository to the R package nowcaster, nowcasting with INLA☆21Updated last week
- Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.☆18Updated 2 weeks ago
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- Inferring high-resolution human mixing patterns for disease modeling☆46Updated 2 years ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Il…☆14Updated 7 months ago
- Course on nowcasting and forecasting of infectious disease dynamics☆19Updated this week
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆12Updated 2 years ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 3 years ago
- R package with social contact data for 177 regions (Prem et al. 2017; Prem et al. 2021)☆9Updated 6 months ago
- R Package for individual based epidemiological models☆30Updated 9 months ago
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)☆16Updated 5 months ago
- Some code for monkeypox☆10Updated 2 years ago
- Two-stage interrupted time series analysis of excess mortality in Italy during the COVID-19 pandemic☆16Updated 4 months ago
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆11Updated 9 months ago
- R package for statistical inference using panelPOMPs (panel Partially Observed Markov Processes)☆11Updated 9 months ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- Bayesian Modelling in Epidemiology Case Line Lists☆13Updated last year
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- R package for deriving social mixing matrices from survey data.☆38Updated 3 weeks ago
- ☆17Updated 4 years ago
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆15Updated 5 years ago
- ☆10Updated 8 months ago
- epidemia package☆48Updated 3 years ago
- Basic Epidemic, Activity, and Response COVID-19 model☆31Updated 4 years ago
- Code to test Rt estimates against synthetic data☆18Updated 4 years ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year