amanda-minter / abc_RLinks
☆11Updated 5 years ago
Alternatives and similar repositories for abc_R
Users that are interested in abc_R are comparing it to the libraries listed below
Sorting:
- Updates to the synthetic contact matrices☆37Updated 2 years ago
- Code and data for On the Predictability of Infectious Disease Outbreaks by SV Scarpino & G Petri☆20Updated this week
- Repository to the R package nowcaster, nowcasting with INLA☆22Updated 2 weeks ago
- Two-stage interrupted time series analysis of excess mortality in Italy during the COVID-19 pandemic☆16Updated 7 months ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- An R package for Bayes Linear emulation and history matching.☆16Updated last month
- Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.☆18Updated 3 weeks ago
- ☆17Updated 4 years ago
- R Package for individual based epidemiological models☆30Updated last month
- Excess deaths due to COVID-19 pandemic in 2020☆11Updated 3 years ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- R package for deriving social mixing matrices from survey data.☆41Updated 2 weeks ago
- Code and data to reproduce the figures of "Effect of COVID-19 response policies on walking behavior in US cities"☆11Updated 4 years ago
- Code to test Rt estimates against synthetic data☆18Updated 4 years ago
- Inferring high-resolution human mixing patterns for disease modeling☆47Updated 2 years ago
- European Covid-19 Forecast Hub.☆48Updated 11 months ago
- epidemia package☆48Updated 3 years ago
- Points of Significance: Modeling infectious epidemics☆11Updated 11 months ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆11Updated last year
- Course on nowcasting and forecasting of infectious disease dynamics☆21Updated this week
- ☆20Updated 2 years ago
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)☆16Updated last month
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆16Updated 6 years ago
- Meshed GP for Bayesian spatial big data regression☆13Updated last week
- Bayesian estimation of Rt (C code)☆13Updated 5 years ago
- Utilities for Scoring and Assessing Predictions☆56Updated last week
- Analysis code and data for COVID-19 age-specific clinical fraction☆23Updated 5 years ago
- Fit stochastic differential equation models with time-varying parameters☆15Updated 5 months ago
- Basic Epidemic, Activity, and Response COVID-19 model☆31Updated 5 years ago