amanda-minter / abc_RLinks
☆11Updated 4 years ago
Alternatives and similar repositories for abc_R
Users that are interested in abc_R are comparing it to the libraries listed below
Sorting:
- An R package for Bayes Linear emulation and history matching.☆16Updated 3 months ago
- Updates to the synthetic contact matrices☆36Updated last year
- Repository to the R package nowcaster, nowcasting with INLA☆21Updated this week
- Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Il…☆14Updated 7 months ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.☆18Updated 3 weeks ago
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- Inferring high-resolution human mixing patterns for disease modeling☆45Updated 2 years ago
- Course on nowcasting and forecasting of infectious disease dynamcis☆17Updated this week
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)☆16Updated 5 months ago
- Some code for monkeypox☆10Updated 2 years ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 2 years ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- R Package for individual based epidemiological models☆30Updated 8 months ago
- ☆17Updated 4 years ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆27Updated 4 years ago
- R package for statistical inference using panelPOMPs (panel Partially Observed Markov Processes)☆11Updated 8 months ago
- R package with social contact data for 177 regions (Prem et al. 2017; Prem et al. 2021)☆9Updated 6 months ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆12Updated 2 years ago
- Code of PriorVAE: encoding spatial priors with variational autoencoders☆12Updated last year
- Bayesian Modelling in Epidemiology Case Line Lists☆13Updated last year
- ☆10Updated 8 months ago
- Two-stage interrupted time series analysis of excess mortality in Italy during the COVID-19 pandemic☆16Updated 3 months ago
- Workshop on hhh4 and the endemic-epidemic framework☆17Updated 2 years ago
- R package for deriving social mixing matrices from survey data.☆38Updated this week
- An R package for the analysis of infectious disease transmission data☆10Updated 3 years ago
- Contemporary statistical inference for infectious disease models using Stan☆16Updated 6 years ago
- Code and data for On the Predictability of Infectious Disease Outbreaks by SV Scarpino & G Petri☆19Updated 5 years ago