Workshop on hhh4 and the endemic-epidemic framework
☆19Oct 13, 2022Updated 3 years ago
Alternatives and similar repositories for hhh4-workshop
Users that are interested in hhh4-workshop are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Some code for monkeypox☆10Jan 24, 2023Updated 3 years ago
- Bayesian Modelling in Epidemiology Case Line Lists☆14Oct 7, 2025Updated 9 months ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Jun 14, 2022Updated 4 years ago
- Endo A. et al., "Introduction to the particle Markov-chain Monte Carlo." Epidemics, 2019.☆13Aug 11, 2022Updated 3 years ago
- An R package to help assess the sensitivity of a Bayesian model (fitted with Stan) to the specification of its likelihood and priors☆11May 29, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆12Aug 31, 2022Updated 3 years ago
- An R package for Bayes Linear emulation and history matching.☆19Dec 1, 2025Updated 7 months ago
- Storage for results of Bayesian inference☆15Updated this week
- ☆10Sep 30, 2025Updated 9 months ago
- Course on nowcasting and forecasting of infectious disease dynamics☆24Jul 14, 2026Updated last week
- Derive social mixing matrices from survey data.☆44Jul 14, 2026Updated last week
- Short course on parametric survival analysis☆15Apr 13, 2026Updated 3 months ago
- Code for the talk "Approximate Bayesian inference for latent Gaussian models in Stan"☆13Updated this week
- Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Il…☆17Oct 31, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Estimate epidemiological delay distributions with brms☆16Jun 22, 2026Updated last month
- R package to calculate the final size of an SIR epidemic in populations with heterogeneity in social contacts and disease susceptibility☆15Mar 26, 2026Updated 3 months ago
- A Bayesian model for time-series count data with weekend effects and a lagged reporting process☆10Mar 7, 2022Updated 4 years ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆19May 9, 2024Updated 2 years ago
- ☆21Feb 15, 2023Updated 3 years ago
- ☆19Dec 22, 2025Updated 7 months ago
- Covid-19 epidemiology - data and analysis☆11Dec 7, 2023Updated 2 years ago
- ☆10Feb 9, 2026Updated 5 months ago
- Excess deaths due to COVID-19 pandemic in 2020☆11Jan 27, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code of PriorVAE: encoding spatial priors with variational autoencoders☆12Jul 13, 2023Updated 3 years ago
- R code to replicate analyses in Clark et al 2025 (Beyond single-species models: leveraging multispecies forecasts to navigate the dynamic…☆15Feb 19, 2025Updated last year
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆28Feb 3, 2021Updated 5 years ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Nov 10, 2023Updated 2 years ago
- A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.☆21Sep 1, 2025Updated 10 months ago
- ☆14Oct 23, 2020Updated 5 years ago
- Pareto smoothed importance sampling☆18Updated this week
- ☆23Jun 23, 2026Updated last month
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Dec 18, 2022Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Dec 7, 2023Updated 2 years ago
- The official implementation of Non-separable Spatio-temporal Graph Kernels via SPDEs.☆16Jun 2, 2022Updated 4 years ago
- Quantifying the impacts of public health interventions on transmission of COVID-19 in Australia☆14Apr 6, 2023Updated 3 years ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆23Dec 9, 2023Updated 2 years ago
- Updates to the synthetic contact matrices☆39Sep 27, 2023Updated 2 years ago
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆12Sep 10, 2024Updated last year
- PhD thesis submitted to the University of Bristol. Title: Modelling BCG vaccination in the UK: What is the impact of changing policy?☆12Jan 7, 2020Updated 6 years ago