Alternatives and similar repositories for EpiNow2

Users that are interested in EpiNow2 are comparing it to the libraries listed below

• mrc-ide / EpiEstim
  A tool to estimate time varying instantaneous reproduction number during epidemics
  ☆101Updated last week
• ImperialCollegeLondon / epidemia
  epidemia package
  ☆48Updated 3 years ago
• epiforecasts / socialmixr
  R package for deriving social mixing matrices from survey data.
  ☆42Updated last week
• epiforecasts / EpiNow
  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
  ☆33Updated 2 years ago
• mrc-ide / squire
  SEIR transmission model of COVID-19. Documentation at:
  ☆51Updated last year
• mobs-lab / mixing-patterns
  Inferring high-resolution human mixing patterns for disease modeling
  ☆47Updated 2 years ago
• CDCgov / wastewater-informed-covid-forecasting
  Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub
  ☆49Updated this week
• florianhartig / BayesianTools
  General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics
  ☆126Updated last year
• kingaa / pomp
  R package for statistical inference using partially observed Markov processes
  ☆118Updated last week
• epinowcast / epinowcast
  A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation…
  ☆62Updated this week
• WHO-Collaboratory / collaboratory-epiparameter-community
  ☆42Updated 3 months ago
• appliedepi / epiRhandbook_eng
  The repository for the English version of the Epidemiologist R Handbook
  ☆131Updated 10 months ago
• epiverse-trace / epiparameter
  R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…
  ☆35Updated this week
• kieshaprem / synthetic-contact-matrices
  Updates to the synthetic contact matrices
  ☆39Updated 2 years ago
• EpiModel / EpiModel-Gallery
  Gallery of Network-Based Epidemic Model Templates for EpiModel
  ☆55Updated last year
• kidusasfaw / spatPomp
  R package for statistical inference of spatiotemporal partially observed Markov processes
  ☆11Updated 11 months ago
• andrewcparnell / jags_examples
  A large set of JAGS examples using R
  ☆98Updated 2 years ago
• mac-theobio / McMasterPandemic
  SEIR+ model
  ☆19Updated 4 months ago
• CDCgov / ww-inference-model
  An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …
  ☆26Updated 2 weeks ago
• vnminin / SISMID_MCMC_I
  Teaching materials for MCMC I module in the Summer Institute in Statistics and Modeling in Infectious Diseases (SISMID)
  ☆24Updated 4 years ago
• stefan-m-lenz / JuliaConnectoR
  A functionally oriented interface for calling Julia from R
  ☆110Updated last year
• nimble-dev / nimble
  The base NIMBLE package for R
  ☆184Updated last week
• midas-network / covid19-scenario-modeling-hub_archive
  COVID-19 Scenario Modeling Hub
  ☆67Updated 7 months ago
• cobeylab / Rt_estimation
  Code to test Rt estimates against synthetic data
  ☆18Updated 5 years ago
• ASKurz / Doing-Bayesian-Data-Analysis-in-brms-and-the-tidyverse
  The bookdown version lives here: https://bookdown.org/content/3686
  ☆152Updated 7 months ago
• flatironinstitute / stan-playground
  Run Stan models in the browser
  ☆53Updated this week
• jamesotto852 / ggdensity
  An R package for interpretable visualizations of bivariate density estimates
  ☆235Updated 2 years ago
• gavinsimpson / gratia
  ggplot-based graphics and useful functions for GAMs fitted using the mgcv package
  ☆229Updated 3 weeks ago
• european-modelling-hubs / covid19-forecast-hub-europe_archive
  European Covid-19 Forecast Hub.
  ☆49Updated last year
• midas-network / flu-scenario-modeling-hub_archive
  Flu Scenario Modeling Hub
  ☆12Updated 7 months ago