Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
☆140Oct 5, 2026Updated last week
Alternatives and similar repositories for EpiNow2
Users that are interested in EpiNow2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- National and subnational estimates of the time-varying reproduction number for Covid-19☆34Nov 26, 2025Updated 10 months ago
- Estimate epidemiological delay distributions with brms☆16Sep 30, 2026Updated last week
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Feb 2, 2023Updated 3 years ago
- Utilities for Scoring and Assessing Predictions☆64Sep 27, 2026Updated 2 weeks ago
- A tool to estimate time varying instantaneous reproduction number during epidemics☆105Sep 27, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation…☆67Oct 1, 2026Updated last week
- Inference framework for serological data☆20Sep 24, 2026Updated 2 weeks ago
- Bayesian Modelling in Epidemiology Case Line Lists☆14Oct 7, 2025Updated last year
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆33Updated this week
- ☆23Oct 1, 2026Updated last week
- This repository contains python implementations of scoring rules for forecasts provided in a prediction interval format.☆11Jul 31, 2020Updated 6 years ago
- epidemia package☆50Jun 24, 2022Updated 4 years ago
- Short course on parametric survival analysis☆15Oct 1, 2026Updated last week
- Course on nowcasting and forecasting of infectious disease dynamics☆28Oct 1, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Sep 19, 2026Updated 3 weeks ago
- R package with social contact data for 177 regions (Prem et al. 2017; Prem et al. 2021)☆11Jul 11, 2025Updated last year
- ☆15Aug 18, 2021Updated 5 years ago
- R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…☆39Sep 28, 2026Updated last week
- An R package for the analysis of infectious disease transmission data☆10Nov 8, 2021Updated 4 years ago
- Some code for monkeypox☆10Jan 24, 2023Updated 3 years ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆30Updated this week
- Models and infrastructure for routine forecasting of respiratory disease burden☆17Updated this week
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆28Feb 3, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Additional censored event tools for Distributions.jl☆15Sep 1, 2026Updated last month
- Contemporary statistical inference for infectious disease models using Stan☆16Mar 3, 2019Updated 7 years ago
- Workshop on hhh4 and the endemic-epidemic framework☆19Oct 13, 2022Updated 3 years ago
- Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Il…☆17Oct 31, 2024Updated last year
- Updates to the synthetic contact matrices☆41Sep 27, 2023Updated 3 years ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆23Dec 9, 2023Updated 2 years ago
- R code to replicate analyses in Clark et al 2025 (Beyond single-species models: leveraging multispecies forecasts to navigate the dynamic…☆15Feb 19, 2025Updated last year
- R package for real-time Rt estimation with penalized splines☆16Jan 12, 2026Updated 8 months ago
- Tools for building predictive models in epidemiology.☆18Sep 11, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- RSV Scenario Modeling Hub☆17Updated this week
- R Package for individual based epidemiological models☆35Jun 8, 2026Updated 4 months ago
- Code and data for the manuscript "Optimal, near-optimal, and robust epidemic control"☆11Jul 23, 2022Updated 4 years ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Dec 7, 2023Updated 2 years ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Feb 2, 2023Updated 3 years ago
- Two-stage interrupted time series analysis of excess mortality in Italy during the COVID-19 pandemic☆17Feb 13, 2025Updated last year
- Repository to the R package nowcaster, nowcasting with INLA☆25Sep 18, 2026Updated 3 weeks ago