epiforecasts / EpiNow2
Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
☆120Updated this week
Alternatives and similar repositories for EpiNow2:
Users that are interested in EpiNow2 are comparing it to the libraries listed below
- A tool to estimate time varying instantaneous reproduction number during epidemics☆95Updated 5 months ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- epidemia package☆48Updated 2 years ago
- Updates to the synthetic contact matrices☆36Updated last year
- Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub☆47Updated last week
- ☆39Updated 3 weeks ago
- R package for statistical inference using partially observed Markov processes☆114Updated last week
- Gallery of Network-Based Epidemic Model Templates for EpiModel☆53Updated 4 months ago
- R package for statistical inference of spatiotemporal partially observed Markov processes☆11Updated 2 months ago
- R package for deriving social mixing matrices from survey data.☆38Updated 2 months ago
- Flu Scenario Modeling Hub☆10Updated this week
- SEIR transmission model of COVID-19. Documentation at:☆51Updated last year
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆23Updated last month
- SEIR+ model☆19Updated 5 months ago
- European Covid-19 Forecast Hub.☆48Updated 3 months ago
- Extract raw underlying data from PDF figures☆56Updated last year
- Source code for OpenCOVID, an individual-based model of SARS-CoV-2 transmission and COVID-19 disease dynamics.☆11Updated 7 months ago
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆61Updated 2 weeks ago
- Inferring high-resolution human mixing patterns for disease modeling☆45Updated 2 years ago
- A framework for data-driven stochastic disease spread simulations☆34Updated 3 weeks ago
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Updated 2 years ago
- R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…☆33Updated 2 weeks ago
- ☆31Updated last week
- Network Models of HIV Transmission Dynamics among MSM and Heterosexuals☆25Updated 2 years ago
- Personal blog☆40Updated 4 years ago
- R package containing several network datasets☆143Updated 10 months ago
- The Flexible Epidemic Modeling Pipeline☆9Updated this week
- Source code for the EpiEstim app.☆31Updated 4 years ago
- Collection of analyses, packages, visualisations of COVID-19 data in R☆151Updated 2 years ago
- ᚩ A DSL for describing and solving differential equations in R☆106Updated 2 weeks ago