epiforecasts / EpiNow2

Related projects ⓘ

Alternatives and complementary repositories for EpiNow2

• mrc-ide / EpiEstim
  A tool to estimate time varying instantaneous reproduction number during epidemics
  ☆94Updated 2 months ago
• ImperialCollegeLondon / epidemia
  epidemia package
  ☆47Updated 2 years ago
• epiforecasts / EpiNow
  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
  ☆33Updated last year
• CDCgov / wastewater-informed-covid-forecasting
  Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub
  ☆44Updated this week
• WHO-Collaboratory / collaboratory-epiparameter-community
  ☆37Updated 3 weeks ago
• EpiModel / EpiModel-Gallery
  Gallery of Network-Based Epidemic Model Templates for EpiModel
  ☆52Updated last month
• epiforecasts / socialmixr
  R package for deriving social mixing matrices from survey data.
  ☆38Updated this week
• mrc-ide / squire
  SEIR transmission model of COVID-19. Documentation at:
  ☆50Updated 9 months ago
• kieshaprem / synthetic-contact-matrices
  Updates to the synthetic contact matrices
  ☆36Updated last year
• kingaa / pomp
  R package for statistical inference using partially observed Markov processes
  ☆114Updated this week
• epiverse-trace / epiparameter
  R package with library of epidemiological parameters for infectious diseases and functions and classes for working with parameters
  ☆33Updated 3 weeks ago
• appliedepi / epiRhandbook_eng
  The repository for the English version of the Epidemiologist R Handbook
  ☆99Updated 3 weeks ago
• epinowcast / epinowcast
  Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…
  ☆58Updated last week
• epiforecasts / covidregionaldata
  An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…
  ☆37Updated last year
• kidusasfaw / spatPomp
  R package for statistical inference of spatiotemporal partially observed Markov processes
  ☆11Updated last week
• behrman / ros
  Regression and Other Stories - Tidyverse Examples
  ☆99Updated 3 years ago
• timchurches / blog
  Personal blog
  ☆40Updated 4 years ago
• HopkinsIDD / flepiMoP
  The Flexible Epidemic Modeling Pipeline
  ☆9Updated this week
• jamesotto852 / ggdensity
  An R package for interpretable visualizations of bivariate density estimates
  ☆230Updated last year
• openpharma / mmrm
  Mixed Models for Repeated Measures (MMRM) in R.
  ☆134Updated 2 weeks ago
• adamkucharski / scrapR
  Extract raw underlying data from PDF figures
  ☆56Updated 9 months ago
• ekstroem / dataReporter
  ☆86Updated last year
• gasparrini / dlnm
  R package dlnm
  ☆75Updated 3 years ago
• ASKurz / Doing-Bayesian-Data-Analysis-in-brms-and-the-tidyverse
  The bookdown version lives here: https://bookdown.org/content/3686
  ☆147Updated 5 months ago
• mine-cetinkaya-rundel / covid19-r
  Collection of analyses, packages, visualisations of COVID-19 data in R
  ☆151Updated 2 years ago
• european-modelling-hubs / covid19-forecast-hub-europe_archive
  European Covid-19 Forecast Hub.
  ☆48Updated 3 weeks ago
• brandmaier / ggx
  ggx
  ☆150Updated 2 years ago
• stan-dev / cmdstanr
  CmdStanR: the R interface to CmdStan
  ☆144Updated this week
• mrc-ide / odin
  ᚩ A DSL for describing and solving differential equations in R
  ☆105Updated 2 months ago
• andreamazzella / IntRo
  Introduction to R for health data
  ☆11Updated last month