Alternatives and similar repositories for EpiNow2

Users that are interested in EpiNow2 are comparing it to the libraries listed below

• mrc-ide / EpiEstim
  A tool to estimate time varying instantaneous reproduction number during epidemics
  ☆99Updated 3 months ago
• epiforecasts / EpiNow
  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
  ☆33Updated 2 years ago
• ImperialCollegeLondon / epidemia
  epidemia package
  ☆48Updated 3 years ago
• epiforecasts / socialmixr
  R package for deriving social mixing matrices from survey data.
  ☆40Updated this week
• CDCgov / wastewater-informed-covid-forecasting
  Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub
  ☆49Updated last week
• mrc-ide / squire
  SEIR transmission model of COVID-19. Documentation at:
  ☆51Updated last year
• epinowcast / epinowcast
  Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…
  ☆62Updated 2 weeks ago
• epiverse-trace / epiparameter
  R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…
  ☆35Updated 3 weeks ago
• CDCgov / ww-inference-model
  An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …
  ☆25Updated 8 months ago
• andrewcparnell / jags_examples
  A large set of JAGS examples using R
  ☆98Updated 2 years ago
• cdcepi / Flusight-forecast-data
  ☆40Updated last year
• WHO-Collaboratory / collaboratory-epiparameter-community
  ☆41Updated 3 weeks ago
• kieshaprem / synthetic-contact-matrices
  Updates to the synthetic contact matrices
  ☆37Updated last year
• florianhartig / BayesianTools
  General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics
  ☆126Updated last year
• adrian-lison / EpiSewer
  An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.
  ☆22Updated this week
• kidusasfaw / spatPomp
  R package for statistical inference of spatiotemporal partially observed Markov processes
  ☆11Updated 8 months ago
• EpiModel / EpiModel-Gallery
  Gallery of Network-Based Epidemic Model Templates for EpiModel
  ☆55Updated 10 months ago
• stewid / SimInf
  A framework for data-driven stochastic disease spread simulations
  ☆35Updated this week
• kingaa / pomp
  R package for statistical inference using partially observed Markov processes
  ☆118Updated this week
• appliedepi / epiRhandbook_eng
  The repository for the English version of the Epidemiologist R Handbook
  ☆125Updated 7 months ago
• mac-theobio / McMasterPandemic
  SEIR+ model
  ☆19Updated last month
• nimble-dev / nimble
  The base NIMBLE package for R
  ☆182Updated 2 weeks ago
• cobeylab / Rt_estimation
  Code to test Rt estimates against synthetic data
  ☆18Updated 4 years ago
• adamkucharski / scrapR
  Extract raw underlying data from PDF figures
  ☆55Updated last year
• vnminin / SISMID_MCMC_I
  Teaching materials for MCMC I module in the Summer Institute in Statistics and Modeling in Infectious Diseases (SISMID)
  ☆24Updated 4 years ago
• cdcepi / FluSight-forecast-hub
  ☆42Updated this week
• midas-network / flu-scenario-modeling-hub_archive
  Flu Scenario Modeling Hub
  ☆12Updated 4 months ago
• stan-dev / cmdstanr
  CmdStanR: the R interface to CmdStan
  ☆154Updated 3 weeks ago
• EpiModel / EpiModel
  Mathematical Modeling of Infectious Disease Dynamics
  ☆257Updated 4 months ago
• gavinsimpson / gratia
  ggplot-based graphics and useful functions for GAMs fitted using the mgcv package
  ☆228Updated last week