Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
☆139Jun 5, 2026Updated last week
Alternatives and similar repositories for EpiNow2
Users that are interested in EpiNow2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation…☆65Updated this week
- National and subnational estimates of the time-varying reproduction number for Covid-19☆34Nov 26, 2025Updated 6 months ago
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Feb 2, 2023Updated 3 years ago
- Utilities for Scoring and Assessing Predictions☆61May 30, 2026Updated last week
- A tool to estimate time varying instantaneous reproduction number during epidemics☆104Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Inference framework for serological data☆20Mar 31, 2026Updated 2 months ago
- Bayesian Modelling in Epidemiology Case Line Lists☆14Oct 7, 2025Updated 8 months ago
- Estimate epidemiological delay distributions with brms☆16Apr 13, 2026Updated 2 months ago
- ☆23Jun 6, 2025Updated last year
- Models and infrastructure for routine forecasting of respiratory disease burden☆16Updated this week
- Short course on parametric survival analysis☆15Apr 13, 2026Updated last month
- epidemia package☆50Jun 24, 2022Updated 3 years ago
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆30Updated this week
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆26Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- R package with social contact data for 177 regions (Prem et al. 2017; Prem et al. 2021)☆10Jul 11, 2025Updated 11 months ago
- An R package for the analysis of infectious disease transmission data☆10Nov 8, 2021Updated 4 years ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Nov 10, 2023Updated 2 years ago
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆28Feb 3, 2021Updated 5 years ago
- Contemporary statistical inference for infectious disease models using Stan☆16Mar 3, 2019Updated 7 years ago
- Workshop on hhh4 and the endemic-epidemic framework☆19Oct 13, 2022Updated 3 years ago
- Updates to the synthetic contact matrices☆39Sep 27, 2023Updated 2 years ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Dec 9, 2023Updated 2 years ago
- Some code for monkeypox☆10Jan 24, 2023Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Tools for building predictive models in epidemiology.☆17May 9, 2026Updated last month
- R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…☆37Jun 3, 2026Updated last week
- An R package for Bayes Linear emulation and history matching.☆18Dec 1, 2025Updated 6 months ago
- R Package for individual based epidemiological models☆34Updated this week
- Code and data for the manuscript "Optimal, near-optimal, and robust epidemic control"☆11Jul 23, 2022Updated 3 years ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Dec 7, 2023Updated 2 years ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Feb 2, 2023Updated 3 years ago
- ☆21Feb 15, 2023Updated 3 years ago
- Two-stage interrupted time series analysis of excess mortality in Italy during the COVID-19 pandemic☆17Feb 13, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Bayesian estimation of Rt (C code)☆13Mar 18, 2020Updated 6 years ago
- US RSV Forecast Hub☆12Jun 5, 2026Updated last week
- Additional censored event tools for Distributions.jl☆14Updated this week
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆19May 9, 2024Updated 2 years ago
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)☆16Nov 11, 2025Updated 7 months ago
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Aug 14, 2025Updated 9 months ago
- An R package to help assess the sensitivity of a Bayesian model (fitted with Stan) to the specification of its likelihood and priors☆11May 29, 2026Updated 2 weeks ago