adamkucharski / 2020-cov-tracing
Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on reducing transmission of SARS-CoV-2 in different settings: a mathematical modelling study. Lancet Infectious Diseases, 2020
☆13Updated last year
Related projects ⓘ
Alternatives and complementary repositories for 2020-cov-tracing
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆15Updated this week
- Bayesian Modelling in Epidemiology Case Line Lists☆13Updated 6 months ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆11Updated 2 years ago
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- Repo for the LSHTM R Users Group (RUG)☆9Updated 3 years ago
- Joint modeling multivariate longitudinal and time-to-event outcomes with INLA☆17Updated last month
- Examples on INLA within MCMC☆11Updated 7 years ago
- ☆28Updated last month
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated 11 months ago
- Short course on parametric survival analysis☆15Updated last year
- Course on nowcasting and forecasting of infectious disease dynamcis☆11Updated last week
- Analysis of excess mortality in Italy during the COVID-19 pandemic☆15Updated 5 months ago
- R Package for individual based epidemiological models☆30Updated 2 months ago
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆14Updated 5 years ago
- Quantifying the impacts of public health interventions on transmission of COVID-19 in Australia☆13Updated last year
- CRAN Task View: Epidemiology☆21Updated 2 weeks ago
- Infectious disease model library and utilities☆15Updated 2 years ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆16Updated last year
- Create Contact Matrices from Population Data☆18Updated 2 months ago
- ☆10Updated last month
- R package with social contact data for 177 regions (Prem et al. 2017; Prem et al. 2021)☆9Updated this week
- ☆9Updated 2 years ago
- ☆36Updated 2 weeks ago
- A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.☆19Updated 3 weeks ago
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆10Updated 2 months ago
- Analysing epidemic trends using AutoML approaches.☆18Updated 3 years ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆18Updated 11 months ago
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆17Updated 2 years ago
- ☆17Updated 3 years ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆15Updated 6 months ago