Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on reducing transmission of SARS-CoV-2 in different settings: a mathematical modelling study. Lancet Infectious Diseases, 2020
☆13Dec 18, 2022Updated 3 years ago
Alternatives and similar repositories for 2020-cov-tracing
Users that are interested in 2020-cov-tracing are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bayesian Modelling in Epidemiology Case Line Lists☆14Oct 7, 2025Updated 9 months ago
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆28Feb 3, 2021Updated 5 years ago
- An R package to help assess the sensitivity of a Bayesian model (fitted with Stan) to the specification of its likelihood and priors☆11May 29, 2026Updated last month
- A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.☆21Sep 1, 2025Updated 10 months ago
- An R package for Bayes Linear emulation and history matching.☆19Dec 1, 2025Updated 7 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆10Sep 30, 2025Updated 9 months ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆19May 9, 2024Updated 2 years ago
- Code and data for the manuscript "Optimal, near-optimal, and robust epidemic control"☆11Jul 23, 2022Updated 3 years ago
- Code for the talk "Approximate Bayesian inference for latent Gaussian models in Stan"☆13May 18, 2022Updated 4 years ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Jun 14, 2022Updated 4 years ago
- A Bayesian model for time-series count data with weekend effects and a lagged reporting process☆10Mar 7, 2022Updated 4 years ago
- Updates to the synthetic contact matrices☆39Sep 27, 2023Updated 2 years ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Nov 10, 2023Updated 2 years ago
- Covid-19 epidemiology - data and analysis☆11Dec 7, 2023Updated 2 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Il…☆17Oct 31, 2024Updated last year
- Short course on parametric survival analysis☆15Apr 13, 2026Updated 3 months ago
- Stand alone markdowns with embedded shiny apps for various eco&epi models☆25Jan 29, 2026Updated 5 months ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆23Dec 9, 2023Updated 2 years ago
- Estimate epidemiological delay distributions with brms☆16Jun 22, 2026Updated last month
- ☆23Jan 30, 2021Updated 5 years ago
- Repository to the R package nowcaster, nowcasting with INLA☆24Jun 23, 2026Updated 3 weeks ago
- Workshop on hhh4 and the endemic-epidemic framework☆19Oct 13, 2022Updated 3 years ago
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆12Sep 10, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆15Jan 10, 2021Updated 5 years ago
- ☆18Mar 30, 2026Updated 3 months ago
- ☆27Feb 25, 2021Updated 5 years ago
- This repository contains python implementations of scoring rules for forecasts provided in a prediction interval format.☆11Jul 31, 2020Updated 5 years ago
- Compile Stan models to WebAssembly.☆15May 14, 2023Updated 3 years ago
- Code associated with A population-level SEIR model for COVID-19 scenarios (updated) by James P. Gleeson, Thomas Brendan Murphy, Joseph D.…☆11May 4, 2021Updated 5 years ago
- ☆20Jun 4, 2026Updated last month
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆27Updated this week
- Simulate infectious disease transmission with contact tracing☆18Jun 29, 2026Updated 3 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆13Mar 18, 2022Updated 4 years ago
- Tool-set to support Bayesian evidence synthesis in R☆24Jul 6, 2026Updated 2 weeks ago
- ☆18May 21, 2024Updated 2 years ago
- Tools for generalized quantile modeling☆16Sep 28, 2022Updated 3 years ago
- CRAN Task View: Epidemiology☆23Jun 6, 2026Updated last month
- ☆21Feb 15, 2023Updated 3 years ago
- Code to test Rt estimates against synthetic data☆18Nov 30, 2020Updated 5 years ago