mobs-lab / mixing-patterns
Inferring high-resolution human mixing patterns for disease modeling
☆45Updated 2 years ago
Alternatives and similar repositories for mixing-patterns:
Users that are interested in mixing-patterns are comparing it to the libraries listed below
- Updates to the synthetic contact matrices☆36Updated last year
- R package for deriving social mixing matrices from survey data.☆38Updated last week
- European Covid-19 Forecast Hub.☆48Updated 6 months ago
- ☆11Updated 4 years ago
- Create synthetic populations for COVID-19 epidemic analyses.☆46Updated 2 months ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- Basic Epidemic, Activity, and Response COVID-19 model☆31Updated 4 years ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 2 years ago
- Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.☆18Updated 2 weeks ago
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- Code to test Rt estimates against synthetic data☆17Updated 4 years ago
- The Flexible Epidemic Modeling Pipeline☆9Updated this week
- Teaching materials for MCMC I module in the Summer Institute in Statistics and Modeling in Infectious Diseases (SISMID)☆24Updated 3 years ago
- Bayesian estimation of Rt (C code)☆13Updated 5 years ago
- Flu Scenario Modeling Hub☆11Updated 2 weeks ago
- COVID-19 Scenario Modeling Hub☆67Updated 2 weeks ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- ☆23Updated 4 years ago
- Network Models of HIV Transmission Dynamics among MSM and Heterosexuals☆25Updated last month
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- Noisy network measurement with stan☆56Updated 4 years ago
- Summer School on Network Science (UU)☆22Updated 9 months ago
- An R package for Bayes Linear emulation and history matching.☆16Updated 2 months ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated 11 months ago
- Age-structured SEIR model for COVID-19 outbreak in Wuhan, China☆40Updated 5 years ago
- Source code for OpenCOVID, an individual-based model of SARS-CoV-2 transmission and COVID-19 disease dynamics.☆11Updated 9 months ago
- ☆39Updated this week
- Modelling transmission dynamics of COVID-19, while accounting for presymptomatic infectiousness, time-varying ascertainment rates, transm…☆21Updated 4 years ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆127Updated last week
- Code and data for On the Predictability of Infectious Disease Outbreaks by SV Scarpino & G Petri☆18Updated 5 years ago