mobs-lab / mixing-patternsLinks
Inferring high-resolution human mixing patterns for disease modeling
☆46Updated 2 years ago
Alternatives and similar repositories for mixing-patterns
Users that are interested in mixing-patterns are comparing it to the libraries listed below
Sorting:
- Updates to the synthetic contact matrices☆37Updated last year
- R package for deriving social mixing matrices from survey data.☆40Updated this week
- Code to test Rt estimates against synthetic data☆18Updated 4 years ago
- Basic Epidemic, Activity, and Response COVID-19 model☆31Updated 5 years ago
- European Covid-19 Forecast Hub.☆48Updated 10 months ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆131Updated last week
- ☆11Updated 5 years ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- OpenABM-Covid19: an agent-based model for modelling the spread of SARS-CoV-2 (coronavirus) and control interventions for the Covid-19 epi…☆122Updated 2 years ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.☆18Updated this week
- COVID-19 Scenario Modeling Hub☆67Updated 4 months ago
- epydemix, the ABC of epidemics☆42Updated 2 weeks ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- A tool to estimate time varying instantaneous reproduction number during epidemics☆99Updated 3 months ago
- R package for estimating excess deaths from daily count data☆20Updated 5 months ago
- Analysis code and data for COVID-19 age-specific clinical fraction☆23Updated 5 years ago
- Points of Significance: Modeling infectious epidemics☆11Updated 10 months ago
- ☆40Updated last year
- Summer School on Network Science (UU)☆22Updated 2 months ago
- Code and data for On the Predictability of Infectious Disease Outbreaks by SV Scarpino & G Petri☆20Updated 6 years ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- In this work, we use S-gene target failure (SGTF) as a proxy of variant status combined with reported case counts to explore the evidence…☆15Updated 3 years ago
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated last month
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- ☆17Updated 4 years ago
- Source code for OpenCOVID, an individual-based model of SARS-CoV-2 transmission and COVID-19 disease dynamics.☆11Updated last year
- ☆23Updated 4 years ago
- Bayesian estimation of Rt (C code)☆13Updated 5 years ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year