mobs-lab / mixing-patternsLinks
Inferring high-resolution human mixing patterns for disease modeling
☆46Updated 2 years ago
Alternatives and similar repositories for mixing-patterns
Users that are interested in mixing-patterns are comparing it to the libraries listed below
Sorting:
- Updates to the synthetic contact matrices☆37Updated last year
- epydemix, the ABC of epidemics☆36Updated 3 weeks ago
- R package for deriving social mixing matrices from survey data.☆38Updated 3 weeks ago
- Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.☆18Updated last week
- Code to test Rt estimates against synthetic data☆18Updated 4 years ago
- Network Models of HIV Transmission Dynamics among MSM and Heterosexuals☆25Updated 3 months ago
- ☆11Updated 4 years ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- COVID-19 Scenario Modeling Hub☆68Updated last month
- European Covid-19 Forecast Hub.☆48Updated 7 months ago
- Basic Epidemic, Activity, and Response COVID-19 model☆31Updated 4 years ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 3 years ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆12Updated 2 years ago
- Create synthetic populations for COVID-19 epidemic analyses.☆47Updated 4 months ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- An R package with Dynamic Models of infectious diseases☆29Updated 7 months ago
- The Flexible Epidemic Modeling Pipeline☆9Updated this week
- Gallery of Network-Based Epidemic Model Templates for EpiModel☆55Updated 8 months ago
- Bayesian estimation of Rt (C code)☆13Updated 5 years ago
- Repository to the R package nowcaster, nowcasting with INLA☆21Updated last week
- ☆23Updated 4 years ago
- Summer School on Network Science (UU)☆22Updated 11 months ago
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated last week
- Flu Scenario Modeling Hub☆12Updated 2 months ago
- Source code for OpenCOVID, an individual-based model of SARS-CoV-2 transmission and COVID-19 disease dynamics.☆11Updated 11 months ago
- Covid19 microsimulation☆15Updated 5 years ago