mobs-lab / mixing-patternsLinks
Inferring high-resolution human mixing patterns for disease modeling
☆48Updated 3 years ago
Alternatives and similar repositories for mixing-patterns
Users that are interested in mixing-patterns are comparing it to the libraries listed below
Sorting:
- Updates to the synthetic contact matrices☆39Updated 2 years ago
- Derive social mixing matrices from survey data.☆43Updated this week
- Code to test Rt estimates against synthetic data☆18Updated 5 years ago
- Basic Epidemic, Activity, and Response COVID-19 model☆31Updated 5 years ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated 2 years ago
- European Covid-19 Forecast Hub.☆49Updated last year
- ☆11Updated 5 years ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year
- COVID-19 Scenario Modeling Hub☆67Updated 8 months ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆133Updated this week
- R package for estimating excess deaths from daily count data☆21Updated last month
- Summer School on Network Science (UU)☆22Updated 6 months ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- ☆49Updated last week
- Points of Significance: Modeling infectious epidemics☆12Updated last year
- In this work, we use S-gene target failure (SGTF) as a proxy of variant status combined with reported case counts to explore the evidence…☆15Updated 3 years ago
- Code and data for On the Predictability of Infectious Disease Outbreaks by SV Scarpino & G Petri☆21Updated 3 months ago
- Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.☆20Updated 4 months ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated 2 years ago
- Bayesian estimation of Rt (C code)☆13Updated 5 years ago
- An R package for Bayes Linear emulation and history matching.☆18Updated last month
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 3 years ago
- epydemix, the ABC of epidemics☆56Updated last month
- Population-wide Testing, Tracing and Isolation Models☆15Updated 5 years ago
- ☆23Updated 4 years ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 3 years ago
- A tool to estimate time varying instantaneous reproduction number during epidemics☆101Updated 2 weeks ago
- Covid19 microsimulation☆14Updated 5 years ago
- Some code for monkeypox☆10Updated 2 years ago
- ☆17Updated 4 years ago