MrinankSharma / COVID19NPISecondWaveLinks
☆15Updated 4 years ago
Alternatives and similar repositories for COVID19NPISecondWave
Users that are interested in COVID19NPISecondWave are comparing it to the libraries listed below
Sorting:
- Code of PriorVAE: encoding spatial priors with variational autoencoders☆12Updated 2 years ago
- Web dashboard to visualize COVID-19 serosurveillance efforts☆12Updated last week
- Code associated with A population-level SEIR model for COVID-19 scenarios (updated) by James P. Gleeson, Thomas Brendan Murphy, Joseph D.…☆10Updated 4 years ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- An R package for Bayes Linear emulation and history matching.☆16Updated last month
- A Bayesian model for time-series count data with weekend effects and a lagged reporting process☆10Updated 3 years ago
- Bayesian Modelling in Epidemiology Case Line Lists☆14Updated last week
- Code and data for the manuscript "Optimal, near-optimal, and robust epidemic control"☆11Updated 3 years ago
- Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.☆18Updated last month
- Tools for generalized quantile modeling☆15Updated 3 years ago
- Infectious disease model library and utilities☆14Updated 3 years ago
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆11Updated last year
- Covid-19 epidemiology - data and analysis☆11Updated last year
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated last month
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- Two-stage interrupted time series analysis of excess mortality in Italy during the COVID-19 pandemic☆16Updated 7 months ago
- Endo A. et al., "Introduction to the particle Markov-chain Monte Carlo." Epidemics, 2019.☆12Updated 3 years ago
- Updates to the synthetic contact matrices☆38Updated 2 years ago
- ☆17Updated 4 years ago
- Data and statistical models for biomarker shedding.☆14Updated last week
- Curated datasets on reported cases of the SARS-CoV-2 Omicron (B.1.1.529) Variant of Concern☆10Updated 3 years ago
- Some code for monkeypox☆10Updated 2 years ago
- The official implementation of Non-separable Spatio-temporal Graph Kernels via SPDEs.☆16Updated 3 years ago
- In this work, we use S-gene target failure (SGTF) as a proxy of variant status combined with reported case counts to explore the evidence…☆15Updated 3 years ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 3 years ago
- Excess deaths due to COVID-19 pandemic in 2020☆11Updated 3 years ago
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)☆16Updated last month
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆16Updated 6 years ago