nicholasdavies / newcovid
☆26Updated 4 years ago
Alternatives and similar repositories for newcovid:
Users that are interested in newcovid are comparing it to the libraries listed below
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- Inference framework for serological data☆16Updated last week
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆18Updated last year
- Covid-19 epidemiology - data and analysis☆11Updated last year
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆16Updated 9 months ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- Basic Tools for the Analysis of Disease Outbreaks☆12Updated 5 years ago
- Infectious disease model library and utilities☆15Updated 2 years ago
- ☆19Updated last month
- Data and forecast submission repository for the 2023 CDC West Nile virus Forecasting Challenge☆10Updated last year
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆11Updated 2 years ago
- ☆9Updated 2 years ago
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆18Updated 3 years ago
- R package for estimating excess deaths from daily count data☆20Updated 7 months ago
- R package for Bayesian nonparametric adaptive smoothing with Stan☆9Updated 4 years ago
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆18Updated this week
- Create Contact Matrices from Population Data☆19Updated this week
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆61Updated this week
- Code to test Rt estimates against synthetic data☆17Updated 4 years ago
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆15Updated 5 years ago
- ☆19Updated 3 years ago
- A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.☆19Updated 4 months ago
- Molecular Epidemiology of Viruses in R☆19Updated 9 years ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 2 years ago
- Disease outbreak reconstruction from epidemiological and genetic data☆31Updated 5 months ago
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Updated 2 years ago
- Repo for the LSHTM R Users Group (RUG)☆9Updated 3 years ago
- Bayesian Modelling in Epidemiology Case Line Lists☆13Updated 9 months ago