Alternatives and similar repositories for newcovid

Users that are interested in newcovid are comparing it to the libraries listed below

• mrc-ide / reactidd
  This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…
  ☆17Updated last year
• epiforecasts / inc2prev
  Estimate epidemiological quantities from repeated cross-sectional prevalence measurements
  ☆17Updated last year
• rafalab / excessmort
  R package for estimating excess deaths from daily count data
  ☆20Updated 4 months ago
• goldingn / neuts2efficacy
  modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission
  ☆17Updated last year
• thibautjombart / OutbreakTools
  Basic Tools for the Analysis of Disease Outbreaks
  ☆12Updated 5 years ago
• mhoehle / STA427_SM4IDE
  Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH
  ☆19Updated 3 years ago
• epinowcast / epinowcast
  Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…
  ☆62Updated last week
• ekenah / TranStat
  An R package for the analysis of infectious disease transmission data
  ☆10Updated 3 years ago
• idem-lab / conmat
  Create Contact Matrices from Population Data
  ☆20Updated 3 weeks ago
• kbubar / vaccine_prioritization
  ☆17Updated 4 years ago
• seabbs / idmodelr
  Infectious disease model library and utilities
  ☆14Updated 2 years ago
• kpzoo / EpiFilter
  Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…
  ☆22Updated last year
• seroanalytics / serosolver
  Inference framework for serological data
  ☆18Updated last month
• adrian-lison / EpiSewer
  An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.
  ☆22Updated last week
• WHO-Collaboratory / collaboratory-epipipeline-community
  ☆14Updated last year
• alex1770 / Covid-19
  Covid-19 epidemiology - data and analysis
  ☆11Updated last year
• cobeylab / Rt_estimation
  Code to test Rt estimates against synthetic data
  ☆18Updated 4 years ago
• CADDE-CENTRE / Novel-SARS-CoV-2-P1-Lineage-in-Brazil
  ☆19Updated 4 years ago
• WHO-Collaboratory / collaboratory-epiparameter-community
  ☆41Updated last week
• oswaldogressani / EpiLPS
  A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.
  ☆19Updated 10 months ago
• mrc-ide / individual
  R Package for individual based epidemiological models
  ☆30Updated 2 weeks ago
• covidestim / covidestim
  Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States
  ☆27Updated 2 weeks ago
• cdcepi / WNV-forecast-project-2023
  Data and forecast submission repository for the 2023 CDC West Nile virus Forecasting Challenge
  ☆11Updated last year
• crsl4 / mindful-programming
  Computing resources for peace of mind
  ☆13Updated 2 years ago
• epiforecasts / covidregionaldata
  An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…
  ☆37Updated 2 years ago
• blab / evofr
  Tools for evolutionary forecasting
  ☆13Updated last month
• charlesm93 / disease_transmission_workflow
  Supplementary code for paper "Bayesian workflow for disease transmission model".
  ☆27Updated 4 years ago
• nicholasjclark / portal_VAR
  R code to replicate analyses in Clark et al 2025 (Beyond single-species models: leveraging multispecies forecasts to navigate the dynamic…
  ☆14Updated 6 months ago
• epiforecasts / socialmixr
  R package for deriving social mixing matrices from survey data.
  ☆40Updated this week
• epiverse-trace / epiparameter
  R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…
  ☆35Updated this week