rosannaclairebarnard / covidm-mtd-Omi
Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nature Communications (2022).
☆11Updated 2 years ago
Alternatives and similar repositories for covidm-mtd-Omi:
Users that are interested in covidm-mtd-Omi are comparing it to the libraries listed below
- Bayesian Modelling in Epidemiology Case Line Lists☆13Updated 9 months ago
- ☆10Updated 4 months ago
- Survival modelling via ODEs☆10Updated 5 months ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 2 years ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- Create Contact Matrices from Population Data☆19Updated 2 weeks ago
- Examples on INLA within MCMC☆11Updated 7 years ago
- Code for the talk "Approximate Bayesian inference for latent Gaussian models in Stan"☆13Updated 2 years ago
- Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.☆17Updated 2 months ago
- An R package for Bayes Linear emulation and history matching.☆16Updated last week
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD, Imperial College London, 2023)☆16Updated last month
- Joint modeling multivariate longitudinal and time-to-event outcomes with INLA☆19Updated last week
- ☆19Updated 2 years ago
- Course on nowcasting and forecasting of infectious disease dynamcis☆14Updated 2 weeks ago
- Real-Time Use of a Dynamic Model to Measure the Impact of Public Health Interventions on Measles Outbreak Size and Duration — Chicago, Il…☆13Updated 3 months ago
- Some code for monkeypox☆10Updated 2 years ago
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆15Updated 5 years ago
- Infectious disease model library and utilities☆15Updated 2 years ago
- ☆30Updated last month
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆16Updated 9 months ago
- Short course on parametric survival analysis☆15Updated 2 months ago
- Endo A. et al., "Introduction to the particle Markov-chain Monte Carlo." Epidemics, 2019.☆13Updated 2 years ago
- Repository to the R package nowcaster, nowcasting with INLA☆18Updated 3 months ago
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆11Updated 5 months ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆18Updated last year
- Workshop on hhh4 and the endemic-epidemic framework☆16Updated 2 years ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆18Updated this week