seabbs / idmodelrLinks
Infectious disease model library and utilities
☆15Updated 3 years ago
Alternatives and similar repositories for idmodelr
Users that are interested in idmodelr are comparing it to the libraries listed below
Sorting:
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated 2 years ago
- Create Contact Matrices from Population Data☆20Updated 3 weeks ago
- Endo A. et al., "Introduction to the particle Markov-chain Monte Carlo." Epidemics, 2019.☆12Updated 3 years ago
- An R package for the analysis of infectious disease transmission data☆10Updated 4 years ago
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆16Updated 6 years ago
- Workshop on hhh4 and the endemic-epidemic framework☆18Updated 3 years ago
- Course on nowcasting and forecasting of infectious disease dynamics☆21Updated this week
- Monte-Carlo State Space Models☆19Updated last year
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- Bayesian Modelling in Epidemiology Case Line Lists☆14Updated last month
- Repository to the R package nowcaster, nowcasting with INLA☆22Updated last month
- Iterate multiple realisations of stochastic models☆20Updated 3 months ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆23Updated this week
- A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation…☆62Updated last week
- Survival modelling via ODEs☆11Updated 7 months ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆12Updated 3 years ago
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆11Updated last year
- Guide for development and peer-review of statistical software☆47Updated 4 months ago
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)☆16Updated this week
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆28Updated 4 years ago
- Compute and visualise incidence (reworking of the original incidence package)☆17Updated 3 months ago
- CRAN Task View: Epidemiology☆24Updated last month
- ☆10Updated last month
- Bayesian Inference of Complex Panel Data☆35Updated 4 months ago
- Estimate epidemiological delay distributions with brms☆15Updated this week
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆20Updated 3 years ago
- An R package for Bayes Linear emulation and history matching.☆17Updated 3 months ago
- ☆31Updated last month
- Automatic Differentiation for R☆23Updated 6 years ago