seabbs / idmodelrLinks
Infectious disease model library and utilities
☆14Updated 2 years ago
Alternatives and similar repositories for idmodelr
Users that are interested in idmodelr are comparing it to the libraries listed below
Sorting:
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- Create Contact Matrices from Population Data☆20Updated 3 weeks ago
- An R package for the analysis of infectious disease transmission data☆10Updated 3 years ago
- a greta extension for Gaussian process modelling☆19Updated 4 months ago
- CRAN Task View: Epidemiology☆22Updated 3 weeks ago
- Compute and visualise incidence (reworking of the original incidence package)☆17Updated last month
- Course on nowcasting and forecasting of infectious disease dynamcis☆17Updated this week
- Monte-Carlo State Space Models☆19Updated 11 months ago
- Iterate multiple realisations of stochastic models☆19Updated 2 months ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- A list of "good practices" for creating a good environment for conference speakers. Based on my own experience as a speaker but prepared …☆29Updated 6 years ago
- Bayesian Modelling in Epidemiology Case Line Lists☆13Updated last year
- The Grammar of Experimental Designs Book☆19Updated last year
- Workshop on hhh4 and the endemic-epidemic framework☆17Updated 2 years ago
- R package for Bayesian nonparametric adaptive smoothing with Stan☆9Updated 4 years ago
- Doubly-Robust and Efficient Estimators for Survival and Ordinal Outcomes in RCTs Without Proportional Hazards or Odds Assumptions☆11Updated 3 years ago
- R package with social contact data for 177 regions (Prem et al. 2017; Prem et al. 2021)☆9Updated 5 months ago
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆11Updated 8 months ago
- Survival modelling via ODEs☆10Updated 2 months ago
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆15Updated 5 years ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat …☆12Updated 2 years ago
- High Dimensional Numerical and Symbolic Calculus in R☆47Updated 2 years ago
- Guide for development and peer-review of statistical software☆44Updated last month
- Automatic Differentiation for R☆23Updated 6 years ago
- Fast, tidy functions for mcmc diagnostics and summaries, built with data.table☆22Updated last month
- Simulate Survival Data☆23Updated 4 years ago
- R Package For Calling Matlab Through System☆12Updated last year
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆18Updated 3 years ago
- R package to allow tidybayes to work with the rethinking package☆26Updated last year