R-package for building and fitting Bayesian ODE models in Stan
☆30Sep 13, 2024Updated last year
Alternatives and similar repositories for odemodeling
Users that are interested in odemodeling are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Bayesian Modelling in Epidemiology Case Line Lists☆14Oct 7, 2025Updated 10 months ago
- An R package for Bayes Linear emulation and history matching.☆19Dec 1, 2025Updated 8 months ago
- A Bayesian model for time-series count data with weekend effects and a lagged reporting process☆10Mar 7, 2022Updated 4 years ago
- An R package to help assess the sensitivity of a Bayesian model (fitted with Stan) to the specification of its likelihood and priors☆11May 29, 2026Updated 2 months ago
- Code of PriorVAE: encoding spatial priors with variational autoencoders☆12Jul 13, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆25Nov 2, 2022Updated 3 years ago
- Code for utilising VAE as means of doing exact MCMC inference in complex high-dimensional space☆14Jun 20, 2023Updated 3 years ago
- Code associated with A population-level SEIR model for COVID-19 scenarios (updated) by James P. Gleeson, Thomas Brendan Murphy, Joseph D.…☆11May 4, 2021Updated 5 years ago
- Pareto smoothed importance sampling☆18Updated this week
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Aug 14, 2025Updated 11 months ago
- ☆10Sep 30, 2025Updated 10 months ago
- Utility provides a more meaningful measure of forecast skill than goodness-of-fit☆18Apr 26, 2022Updated 4 years ago
- Repository to the R package nowcaster, nowcasting with INLA☆24Jul 24, 2026Updated 2 weeks ago
- Tools and tutorials for multi-level regression and post-stratification of survey data☆11Mar 5, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆28Feb 3, 2021Updated 5 years ago
- epidemia package☆50Jun 24, 2022Updated 4 years ago
- Workshop on hhh4 and the endemic-epidemic framework☆19Oct 13, 2022Updated 3 years ago
- Storage for results of Bayesian inference☆15Updated this week
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆19May 9, 2024Updated 2 years ago
- Reimplementation of Stan algorithms☆19Jan 11, 2022Updated 4 years ago
- Covid-19 epidemiology - data and analysis☆11Dec 7, 2023Updated 2 years ago
- ☆10Feb 9, 2026Updated 6 months ago
- Excess deaths due to COVID-19 pandemic in 2020☆11Jan 27, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.☆21Sep 1, 2025Updated 11 months ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Nov 10, 2023Updated 2 years ago
- "Swappable Module" compiler for the Stan probabilistic programming language.☆13Aug 18, 2023Updated 2 years ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Dec 7, 2023Updated 2 years ago
- The official implementation of Non-separable Spatio-temporal Graph Kernels via SPDEs.☆16Jun 2, 2022Updated 4 years ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆23Dec 9, 2023Updated 2 years ago
- Repo for materials for coordinating work on improving Julia's function documentation☆10Jul 30, 2022Updated 4 years ago
- Differential equation solvers with global error estimation☆11Jul 22, 2026Updated 2 weeks ago
- ☆63Jul 13, 2026Updated 3 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆12Sep 10, 2024Updated last year
- library of C++ functions that support applications of Stan in Pharmacometrics☆64Apr 21, 2026Updated 3 months ago
- Short course on parametric survival analysis☆15Aug 5, 2026Updated last week
- Code for the talk "Approximate Bayesian inference for latent Gaussian models in Stan"☆13Aug 4, 2026Updated last week
- Estimate epidemiological delay distributions with brms☆16Jun 22, 2026Updated last month
- Create Contact Matrices from Population Data☆21Feb 24, 2026Updated 5 months ago
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)☆16Nov 11, 2025Updated 9 months ago