covid-19-Re / estimateRLinks
R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic
☆11Updated last year
Alternatives and similar repositories for estimateR
Users that are interested in estimateR are comparing it to the libraries listed below
Sorting:
- Bayesian Modelling in Epidemiology Case Line Lists☆14Updated last year
- ☆10Updated 11 months ago
- Repository to the R package nowcaster, nowcasting with INLA☆22Updated 2 weeks ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆12Updated 3 years ago
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)☆16Updated 3 weeks ago
- Survival modelling via ODEs☆10Updated 5 months ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆16Updated 6 years ago
- An R package for Bayes Linear emulation and history matching.☆16Updated last month
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 3 years ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- Course on nowcasting and forecasting of infectious disease dynamics☆21Updated last week
- Two-stage interrupted time series analysis of excess mortality in Italy during the COVID-19 pandemic☆16Updated 7 months ago
- Excess deaths due to COVID-19 pandemic in 2020☆11Updated 3 years ago
- Create Contact Matrices from Population Data☆20Updated last week
- A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.☆19Updated last week
- Code associated with A population-level SEIR model for COVID-19 scenarios (updated) by James P. Gleeson, Thomas Brendan Murphy, Joseph D.…☆10Updated 4 years ago
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆19Updated 3 years ago
- Quantifying the impacts of public health interventions on transmission of COVID-19 in Australia☆13Updated 2 years ago
- Workshop on hhh4 and the endemic-epidemic framework☆17Updated 2 years ago
- ☆30Updated last month
- Short course on parametric survival analysis☆15Updated 9 months ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆27Updated 4 years ago
- Tools and tutorials for multi-level regression and post-stratification of survey data☆11Updated last year
- ☆17Updated 4 years ago
- Estimate epidemiological delay distributions with brms☆15Updated this week
- Code for the talk "Approximate Bayesian inference for latent Gaussian models in Stan"☆13Updated 3 years ago
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated last month