covid-19-Re / estimateR
R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic
☆11Updated 7 months ago
Alternatives and similar repositories for estimateR:
Users that are interested in estimateR are comparing it to the libraries listed below
- Bayesian Modelling in Epidemiology Case Line Lists☆13Updated 11 months ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- Survival modelling via ODEs☆10Updated last month
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆11Updated 2 years ago
- R package with social contact data for 177 regions (Prem et al. 2017; Prem et al. 2021)☆9Updated 5 months ago
- ☆10Updated 7 months ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 2 years ago
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)☆16Updated 4 months ago
- Course on nowcasting and forecasting of infectious disease dynamcis☆16Updated last week
- Short course on parametric survival analysis☆16Updated 5 months ago
- Infectious disease model library and utilities☆14Updated 2 years ago
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆18Updated 3 years ago
- An R package for Bayes Linear emulation and history matching.☆16Updated 2 months ago
- Create Contact Matrices from Population Data☆20Updated last month
- An R package for the analysis of infectious disease transmission data☆10Updated 3 years ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…