covid-19-Re / estimateRLinks
R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic
☆11Updated last year
Alternatives and similar repositories for estimateR
Users that are interested in estimateR are comparing it to the libraries listed below
Sorting:
- Bayesian Modelling in Epidemiology Case Line Lists☆14Updated 2 weeks ago
- ☆10Updated 3 weeks ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆12Updated 3 years ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)☆16Updated 2 months ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- Survival modelling via ODEs☆11Updated 7 months ago
- Course on nowcasting and forecasting of infectious disease dynamics☆21Updated 3 weeks ago
- Create Contact Matrices from Population Data☆20Updated last month
- Repository to the R package nowcaster, nowcasting with INLA☆22Updated last month
- Short course on parametric survival analysis☆15Updated 11 months ago
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆16Updated 6 years ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 3 years ago
- ☆31Updated last week
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆19Updated 3 years ago
- An R package for Bayes Linear emulation and history matching.☆16Updated 2 months ago
- Two-stage interrupted time series analysis of excess mortality in Italy during the COVID-19 pandemic☆17Updated 8 months ago
- A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.☆20Updated last month
- Excess deaths due to COVID-19 pandemic in 2020☆11Updated 3 years ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- ☆17Updated 4 years ago
- A tool for detection of signals in infectious disease surveillance data.☆14Updated last week
- Code for the talk "Approximate Bayesian inference for latent Gaussian models in Stan"☆13Updated 3 years ago
- Estimate epidemiological delay distributions with brms☆15Updated this week
- Infectious disease model library and utilities☆14Updated 3 years ago
- Data and statistical models for biomarker shedding.☆14Updated this week
- Quantifying the impacts of public health interventions on transmission of COVID-19 in Australia☆13Updated 2 years ago
- Grouped dates in R☆20Updated last month
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆17Updated last year