BDI-pathogens / EpiLineLinks
Bayesian Modelling in Epidemiology Case Line Lists
☆14Updated 2 months ago
Alternatives and similar repositories for EpiLine
Users that are interested in EpiLine are comparing it to the libraries listed below
Sorting:
- ☆10Updated 2 months ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆12Updated 3 years ago
- Survival modelling via ODEs☆11Updated 9 months ago
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)☆16Updated last month
- Short course on parametric survival analysis☆15Updated last year
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 3 years ago
- Code for the talk "Approximate Bayesian inference for latent Gaussian models in Stan"☆13Updated 3 years ago
- Examples on INLA within MCMC☆12Updated 8 years ago
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆11Updated last year
- Estimate epidemiological delay distributions with brms☆15Updated last week
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆16Updated 6 years ago
- An R package for the analysis of infectious disease transmission data☆10Updated 4 years ago
- Joint modeling multivariate longitudinal and time-to-event outcomes with INLA☆21Updated last month
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated 2 years ago
- Code associated with A population-level SEIR model for COVID-19 scenarios (updated) by James P. Gleeson, Thomas Brendan Murphy, Joseph D.…☆11Updated 4 years ago
- An R package to help assess the sensitivity of a Bayesian model (fitted with Stan) to the specification of its likelihood and priors☆10Updated 8 months ago
- ☆32Updated last month
- Course on nowcasting and forecasting of infectious disease dynamics☆22Updated last week
- Repository to the R package nowcaster, nowcasting with INLA☆22Updated 3 months ago
- Workshop on hhh4 and the endemic-epidemic framework☆18Updated 3 years ago
- Two-stage interrupted time series analysis of excess mortality in Italy during the COVID-19 pandemic☆17Updated 10 months ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated 2 years ago
- A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.☆21Updated 3 months ago
- Create Contact Matrices from Population Data☆20Updated this week
- Infectious disease model library and utilities☆15Updated 3 years ago
- Endo A. et al., "Introduction to the particle Markov-chain Monte Carlo." Epidemics, 2019.☆13Updated 3 years ago
- Fit stochastic differential equation models with time-varying parameters☆15Updated 7 months ago
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆28Updated 4 years ago
- Simulate infectious disease transmission with contact tracing☆17Updated last week
- Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.☆20Updated 3 months ago