lsbastos / Delay
Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.
☆14Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for Delay
- Joint modeling multivariate longitudinal and time-to-event outcomes with INLA☆17Updated last month
- Course on nowcasting and forecasting of infectious disease dynamcis☆11Updated this week
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated last year
- Infectious disease model library and utilities☆15Updated 2 years ago
- Bayesian Modelling in Epidemiology Case Line Lists☆13Updated 5 months ago
- Analysis of excess mortality in Italy during the COVID-19 pandemic☆15Updated 4 months ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆11Updated 2 years ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 2 years ago
- Quantifying the impacts of public health interventions on transmission of COVID-19 in Australia☆13Updated last year
- Examples on INLA within MCMC☆11Updated 7 years ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆15Updated this week
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD, Imperial College London, 2023)☆14Updated 2 weeks ago
- Repository to the R package nowcaster, nowcasting with INLA☆17Updated 2 weeks ago
- ☆10Updated last month
- R Package for individual based epidemiological models☆30Updated 2 months ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆16Updated 11 months ago
- CRAN Task View: Epidemiology☆21Updated this week
- Short course on parametric survival analysis☆15Updated last year
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆18Updated 11 months ago
- Excess deaths due to COVID-19 pandemic in 2020☆10Updated 2 years ago
- Analysing epidemic trends using AutoML approaches.☆18Updated 3 years ago
- ☆27Updated last month
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆17Updated 2 years ago
- An R package for Bayes Linear emulation and history matching.☆16Updated 2 weeks ago
- R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic☆10Updated last month
- R package for Bayesian nonparametric adaptive smoothing with Stan☆8Updated 4 years ago
- Repo for the LSHTM R Users Group (RUG)☆9Updated 3 years ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆15Updated 6 months ago
- miscellaneous talks and small projects☆12Updated this week