charlesm93 / disease_transmission_workflow
Supplementary code for paper "Bayesian workflow for disease transmission model".
☆27Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for disease_transmission_workflow
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆15Updated this week
- Code for the talk "Approximate Bayesian inference for latent Gaussian models in Stan"☆13Updated 2 years ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆11Updated 2 years ago
- epidemia package☆47Updated 2 years ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 2 years ago
- R-package for building and fitting Bayesian ODE models in Stan☆25Updated last month
- An R package for Bayes Linear emulation and history matching.☆16Updated 2 weeks ago
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆16Updated this week
- Course on nowcasting and forecasting of infectious disease dynamcis☆11Updated this week
- Joint modeling multivariate longitudinal and time-to-event outcomes with INLA☆17Updated last month
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆17Updated 2 years ago
- The book "Embrace Uncertainty: Fitting Mixed-Effects Models with Julia"☆20Updated last month
- ☆10Updated last month
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆16Updated 11 months ago
- Bayesian Modelling in Epidemiology Case Line Lists☆13Updated 5 months ago
- Some code for monkeypox☆10Updated last year
- Workshop on hhh4 and the endemic-epidemic framework☆15Updated 2 years ago
- Documentation for the Stan language and CmdStan☆38Updated last week
- Examples from McElreath's Statistical Rethinking, First edition coded in Stan.☆49Updated 5 years ago
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆15Updated 6 months ago
- Python package for multi-signal Bayesian renewal modeling with JAX and NumPyro.☆14Updated this week
- Repository to the R package nowcaster, nowcasting with INLA☆17Updated 2 weeks ago
- Short course on parametric survival analysis☆15Updated last year
- Infectious disease model library and utilities☆15Updated 2 years ago
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- ☆10Updated this week
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated last year
- A web app to visualize distributions in Stan. Uses Stan Math C++ compiled to Webassembly to evaluate the functions using actual Stan impl…☆44Updated 2 years ago
- Text project for theoretical primer on human evolutionary ecology☆31Updated last year
- ☆19Updated this week