charlesm93 / disease_transmission_workflow
Supplementary code for paper "Bayesian workflow for disease transmission model".
☆27Updated 3 years ago
Alternatives and similar repositories for disease_transmission_workflow:
Users that are interested in disease_transmission_workflow are comparing it to the libraries listed below
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆15Updated this week
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆11Updated 2 years ago
- Create Contact Matrices from Population Data☆18Updated this week
- Joint modeling multivariate longitudinal and time-to-event outcomes with INLA☆18Updated last week
- Course on nowcasting and forecasting of infectious disease dynamcis☆14Updated 2 weeks ago
- ☆10Updated 3 months ago
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…☆16Updated 8 months ago
- Code for the talk "Approximate Bayesian inference for latent Gaussian models in Stan"☆13Updated 2 years ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 2 years ago
- epidemia package☆48Updated 2 years ago
- An R package for Bayes Linear emulation and history matching.☆16Updated 2 months ago
- Short course on parametric survival analysis☆15Updated last month
- ☆30Updated last week
- R Package for individual based epidemiological models☆30Updated 4 months ago
- Bayesian Modelling in Epidemiology Case Line Lists☆13Updated 8 months ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- The book "Embrace Uncertainty: Fitting Mixed-Effects Models with Julia"☆21Updated last week
- Examples on INLA within MCMC☆11Updated 7 years ago
- A web app to visualize distributions in Stan. Uses Stan Math C++ compiled to Webassembly to evaluate the functions using actual Stan impl…☆44Updated 2 years ago
- Material for my proposed StanCon talk☆20Updated 4 years ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated last year
- Documentation for the Stan language and CmdStan☆38Updated this week
- Workshop on hhh4 and the endemic-epidemic framework☆16Updated 2 years ago
- Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD, Imperial College London, 2023)☆15Updated 2 weeks ago
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- Text project for theoretical primer on human evolutionary ecology☆32Updated 2 years ago
- Repository to the R package nowcaster, nowcasting with INLA☆18Updated 2 months ago
- R package for bridge sampling☆32Updated 8 months ago
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆17Updated 3 years ago