epiforecasts / socialmixrLinks
R package for deriving social mixing matrices from survey data.
☆38Updated last month
Alternatives and similar repositories for socialmixr
Users that are interested in socialmixr are comparing it to the libraries listed below
Sorting:
- SEIR+ model☆19Updated 9 months ago
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆61Updated this week
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- Inferring high-resolution human mixing patterns for disease modeling☆45Updated 2 years ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- Updates to the synthetic contact matrices☆36Updated last year
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Updated 2 years ago
- Repo for the course Statistical Methods in Infectious Disease Epidemiology at UZH☆18Updated 3 years ago
- An R package with Dynamic Models of infectious diseases☆29Updated 6 months ago
- epidemia package☆48Updated 2 years ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 2 years ago
- SEIR transmission model of COVID-19. Documentation at:☆51Updated last year
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆27Updated 4 years ago
- ☆20Updated 2 years ago
- ☆41Updated 3 weeks ago
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆12Updated 2 years ago
- R Package for individual based epidemiological models☆30Updated 8 months ago
- Basic Epidemic, Activity, and Response COVID-19 model☆31Updated 4 years ago
- ☆40Updated 10 months ago
- Code for reconstructing influenza dynamics from surveillance data using evidence synthesis techniques☆21Updated 3 years ago
- Source code for the EpiEstim app.☆31Updated 5 years ago
- European Covid-19 Forecast Hub.☆48Updated 7 months ago
- Teaching materials for MCMC I module in the Summer Institute in Statistics and Modeling in Infectious Diseases (SISMID)☆24Updated 3 years ago
- The Flexible Epidemic Modeling Pipeline☆9Updated this week
- A tool to estimate time varying instantaneous reproduction number during epidemics☆97Updated 2 weeks ago
- Gallery of Network-Based Epidemic Model Templates for EpiModel☆54Updated 7 months ago
- Network Models of HIV Transmission Dynamics among MSM and Heterosexuals☆25Updated 2 months ago
- ☆29Updated 3 weeks ago
- Bayesian SEIR model to estimate the effects of social-distancing on COVID-19☆26Updated 4 years ago