Alternatives and similar repositories for socialmixr

Users that are interested in socialmixr are comparing it to the libraries listed below

• epiforecasts / EpiNow
  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
  ☆33Updated 2 years ago
• ImperialCollegeLondon / epidemia
  epidemia package
  ☆48Updated 3 years ago
• mrc-ide / squire
  SEIR transmission model of COVID-19. Documentation at:
  ☆52Updated last year
• WHO-Collaboratory / collaboratory-epiparameter-community
  ☆42Updated 2 months ago
• european-modelling-hubs / covid19-forecast-hub-europe_archive
  European Covid-19 Forecast Hub.
  ☆49Updated last year
• mrc-ide / EpiEstim
  A tool to estimate time varying instantaneous reproduction number during epidemics
  ☆100Updated 5 months ago
• mrc-ide / individual
  R Package for individual based epidemiological models
  ☆30Updated 3 months ago
• epiforecasts / EpiNow2
  Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
  ☆132Updated this week
• mac-theobio / McMasterPandemic
  SEIR+ model
  ☆19Updated 3 months ago
• akira-endo / COVID19_clustersize
  Analysis of COVID-19 transmission using cluster size distribution
  ☆11Updated 3 years ago
• epiforecasts / covidregionaldata
  An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…
  ☆37Updated 2 years ago
• adamkucharski / 2020-cov-tracing
  Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…
  ☆13Updated 2 years ago
• oswaldosantos / EpiDynamics
  An R package with Dynamic Models of infectious diseases
  ☆30Updated last year
• covidestim / covidestim
  Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States
  ☆27Updated 3 months ago
• kieshaprem / synthetic-contact-matrices
  Updates to the synthetic contact matrices
  ☆39Updated 2 years ago
• idem-lab / conmat
  Create Contact Matrices from Population Data
  ☆20Updated 3 weeks ago
• lsbastos / Delay
  Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.
  ☆16Updated 6 years ago
• adrian-lison / EpiSewer
  An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.
  ☆23Updated this week
• biouea / covidhm
  ☆23Updated 4 years ago
• midas-network / covid19-scenario-modeling-hub_archive
  COVID-19 Scenario Modeling Hub
  ☆67Updated 6 months ago
• jstockwin / EpiEstimApp
  Source code for the EpiEstim app.
  ☆33Updated 3 months ago
• charlesm93 / disease_transmission_workflow
  Supplementary code for paper "Bayesian workflow for disease transmission model".
  ☆28Updated 4 years ago
• mrc-ide / reactidd
  This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (RE…
  ☆17Updated last year
• goldingn / neuts2efficacy
  modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission
  ☆17Updated last year
• epinowcast / epinowcast
  A modular Bayesian framework for real-time infectious disease surveillance. Provides tools for nowcasting, reproduction number estimation…
  ☆62Updated last week
• kpzoo / EpiFilter
  Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…
  ☆22Updated last year
• mobs-lab / mixing-patterns
  Inferring high-resolution human mixing patterns for disease modeling
  ☆47Updated 2 years ago
• objornstad / epimdr2
  ☆20Updated 2 years ago
• covid19br / nowcaster
  Repository to the R package nowcaster, nowcasting with INLA
  ☆22Updated last month
• cobeylab / Rt_estimation
  Code to test Rt estimates against synthetic data
  ☆18Updated 4 years ago