epiforecasts / socialmixrLinks
R package for deriving social mixing matrices from survey data.
☆38Updated 3 weeks ago
Alternatives and similar repositories for socialmixr
Users that are interested in socialmixr are comparing it to the libraries listed below
Sorting:
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- epidemia package☆48Updated 3 years ago
- Analysis of COVID-19 transmission using cluster size distribution☆11Updated 3 years ago
- SEIR+ model☆19Updated 10 months ago
- Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States☆27Updated last month
- European Covid-19 Forecast Hub.☆48Updated 8 months ago
- SEIR transmission model of COVID-19. Documentation at:☆51Updated last year
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆33Updated 2 years ago
- R Package for individual based epidemiological models☆30Updated 10 months ago
- ☆41Updated last month
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆27Updated 4 years ago
- An R package with Dynamic Models of infectious diseases☆30Updated 8 months ago
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆15Updated 6 years ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- Updates to the synthetic contact matrices☆37Updated last year
- An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wh…☆37Updated 2 years ago
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆61Updated last week
- Source code for the EpiEstim app.☆31Updated 5 years ago
- A framework for data-driven stochastic disease spread simulations☆35Updated last month
- Create Contact Matrices from Population Data☆20Updated 2 months ago
- Quantifying the impacts of public health interventions on transmission of COVID-19 in Australia☆13Updated 2 years ago
- Excess deaths due to COVID-19 pandemic in 2020☆11Updated 3 years ago
- Repo for the LSHTM R Users Group (RUG)☆9Updated 3 years ago
- ☆23Updated 4 years ago
- Estimate Realtime Case Counts and Time-varying Epidemiological Parameters☆131Updated this week
- Course on nowcasting and forecasting of infectious disease dynamics☆19Updated 2 weeks ago
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆22Updated this week
- ☆30Updated this week