mrc-ide / reactiddLinks
This repository supports epidemiological and disease-dynamic analyses of data from the REal Time Assessment of Community Transmission (REACT) study. It includes both code and data. For code-related enquiries please contact Oliver Eales: oliver.eales@unimelb.edu.au
☆17Updated last year
Alternatives and similar repositories for reactidd
Users that are interested in reactidd are comparing it to the libraries listed below
Sorting:
- An R package for the analysis of infectious disease transmission data☆10Updated 3 years ago
- Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…☆13Updated 2 years ago
- Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…☆22Updated last year
- Estimate epidemiological quantities from repeated cross-sectional prevalence measurements☆17Updated last year
- Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…☆61Updated this week
- An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.☆22Updated this week
- Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…☆12Updated 2 years ago
- Supplementary code for paper "Bayesian workflow for disease transmission model".☆27Updated 4 years ago
- modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission☆17Updated last year
- ☆19Updated last month
- Bayesian Modelling in Epidemiology Case Line Lists☆13Updated last year
- ☆10Updated 8 months ago
- Some code for monkeypox☆10Updated 2 years ago
- Basic Tools for the Analysis of Disease Outbreaks☆12Updated 5 years ago
- Infectious disease model library and utilities☆14Updated 2 years ago
- Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing☆8Updated 4 years ago
- Epidemiological agent-based modelling packages in both python and C++. Published at: https://doi.org/10.5334/jors.449.☆18Updated 3 weeks ago
- Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.☆15Updated 5 years ago
- An R package for Bayes Linear emulation and history matching.☆16Updated 3 months ago
- R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parame…☆36Updated this week
- Workshop on hhh4 and the endemic-epidemic framework☆17Updated 2 years ago
- An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case …☆23Updated 5 months ago
- A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.☆19Updated 7 months ago
- ☆17Updated 4 years ago
- R package for Bayesian nonparametric adaptive smoothing with Stan☆9Updated 4 years ago
- ☆14Updated last year
- Estimate epidemiological delay distributions with brms☆15Updated last month
- A repository to store COVID-19 variant nowcasts collected as a modeling hub.☆17Updated this week
- Inference framework for serological data☆18Updated 2 weeks ago
- ☆41Updated 3 weeks ago