Alternatives and similar repositories for reactidd

Users that are interested in reactidd are comparing it to the libraries listed below

• epiforecasts / inc2prev
  Estimate epidemiological quantities from repeated cross-sectional prevalence measurements
  ☆17Updated last year
• kpzoo / EpiFilter
  Optimised estimates of reproduction numbers over time, which extract more information from an incidence curve than many conventional appr…
  ☆22Updated last year
• ekenah / TranStat
  An R package for the analysis of infectious disease transmission data
  ☆10Updated 3 years ago
• adrian-lison / EpiSewer
  An R package and Bayesian generative model to estimate epidemiological parameters from wastewater concentration measurements over time.
  ☆22Updated this week
• epinowcast / epinowcast
  Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model wit…
  ☆62Updated this week
• jrfaulkner / spmrf
  R package for Bayesian nonparametric adaptive smoothing with Stan
  ☆9Updated 4 years ago
• nicsteyn2 / NZWastewaterModelling
  ☆10Updated 10 months ago
• goldingn / neuts2efficacy
  modelling SARS-CoV-2 vaccine efficacy from antibody titres, and impact of waning and variants on transmission
  ☆17Updated last year
• rosannaclairebarnard / covidm-mtd-Omi
  Data and code to support Barnard et al., Modelling the medium-term dynamics of SARS-CoV-2 transmission in England in the Omicron era, Nat…
  ☆12Updated 2 years ago
• adamkucharski / 2020-cov-tracing
  Accompanying code for: Kucharski AJ, Klepac P et al. Effectiveness of isolation, testing, contact tracing, and physical distancing on red…
  ☆13Updated 2 years ago
• covidestim / covidestim
  Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States
  ☆27Updated last week
• covid-19-Re / estimateR
  R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic
  ☆11Updated 10 months ago
• charlesm93 / disease_transmission_workflow
  Supplementary code for paper "Bayesian workflow for disease transmission model".
  ☆27Updated 4 years ago
• akira-endo / COVID19_backwardtracing
  Implication of overdispersed transmission of COVID-19 on the effectiveness of contact tracing
  ☆8Updated 4 years ago
• cmmid / hhh4-workshop
  Workshop on hhh4 and the endemic-epidemic framework
  ☆17Updated 2 years ago
• CDCgov / ixa
  ☆19Updated this week
• BDI-pathogens / EpiLine
  Bayesian Modelling in Epidemiology Case Line Lists
  ☆14Updated last year
• idem-lab / conmat
  Create Contact Matrices from Population Data
  ☆20Updated 3 months ago
• WHO-Collaboratory / collaboratory-epiparameter-community
  ☆41Updated last month
• reichlab / variant-nowcast-hub
  A repository to store COVID-19 variant nowcasts collected as a modeling hub.
  ☆17Updated last week
• andy-iskauskas / hmer
  An R package for Bayes Linear emulation and history matching.
  ☆16Updated 5 months ago
• rafalab / excessmort
  R package for estimating excess deaths from daily count data
  ☆20Updated 4 months ago
• akira-endo / COVID19_clustersize
  Analysis of COVID-19 transmission using cluster size distribution
  ☆11Updated 3 years ago
• nfidd / nfidd
  Course on nowcasting and forecasting of infectious disease dynamics
  ☆21Updated last week
• kbubar / vaccine_prioritization
  ☆17Updated 4 years ago
• oswaldogressani / EpiLPS
  A fast and flexible Bayesian tool for estimation of the time-varying reproduction number.
  ☆19Updated 9 months ago
• epinowcast / epidist
  Estimate epidemiological delay distributions with brms
  ☆15Updated 3 months ago
• SamuelBrand1 / MonkeypoxUK
  Some code for monkeypox
  ☆10Updated 2 years ago
• athowes / thesis
  Bayesian spatio-temporal methods for small-area estimation of HIV indicators (PhD thesis, Imperial College London, 2023)
  ☆16Updated 7 months ago
• lsbastos / Delay
  Scripts and data for Modelling reporting delay for disease surveillance data using Bayesian methods.
  ☆15Updated 6 years ago