skinnerlab / MeDIP-seqLinks
A set of scripts and functions for analyzing MeDIP-seq datasets
☆15Updated 4 years ago
Alternatives and similar repositories for MeDIP-seq
Users that are interested in MeDIP-seq are comparing it to the libraries listed below
Sorting:
- Tumor Mutational Burden☆63Updated 3 months ago
- A fast and robust pre-processing pipeline for bulk or single-cell whole-genome bisulfite sequencing (WGBS) data.☆37Updated 4 years ago
- A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq datasets☆84Updated 3 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆60Updated 5 years ago
- ☆50Updated 7 years ago
- Bioinformatics analysis scripts, workflows, general code examples☆54Updated 4 years ago
- ☆50Updated 4 years ago
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆47Updated 2 years ago
- DNA methylation analysis notes from Ming Tang☆92Updated 6 years ago
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Updated 4 years ago
- Scripts to run copynumber variation calls on tumor and normal BAM files using Varscan2☆29Updated 7 years ago
- The wiki repo, with pull request enabled, for the rnaseq_tutorial☆26Updated 5 years ago
- Website for the precision medicine workshop☆45Updated last week
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- Scripts for next generation sequencing☆49Updated 6 years ago
- ☆89Updated 5 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 8 months ago
- TPMCalculator quantifies mRNA abundance directly from the alignments by parsing BAM files☆132Updated last year
- Characterization of Germline variants☆98Updated 3 years ago
- DCC/DAC methylation pipeline source☆57Updated 5 years ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- a versatile and flexible pipeline for analysing different variants of ChIA-PET data☆35Updated 11 months ago
- Workflows for germline short variant discovery in WGS data. PairedEndSingleSampleWf has been superseded in Broad production by https://gi…☆56Updated 5 years ago
- a snakemake pipeline to process ChIP-seq files from GEO or in-house☆110Updated 5 years ago
- GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC☆67Updated 2 years ago
- ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data☆86Updated last year
- R package for bcbio RNA-seq analysis.☆62Updated last year
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆36Updated 2 years ago
- Comprehensive benchmark of structural variant callers☆48Updated 4 years ago
- Python library for processing and visualizing Hi-C data☆20Updated 5 years ago