mojaie / pygosemsimLinks
Gene ontology (GO) semantic similarity library for Python
☆23Updated 6 years ago
Alternatives and similar repositories for pygosemsim
Users that are interested in pygosemsim are comparing it to the libraries listed below
Sorting:
- Network-based project to explore gene connectivity through biological scales☆23Updated 8 months ago
- Python module for prior knowledge integration. Builds databases of signaling pathways, enzyme-substrate interactions, complexes, annotat…☆145Updated last week
- mygene is an easy-to-use Python wrapper to access MyGene.Info services.☆92Updated 6 months ago
- MONET : MOdularising NEtwork Toolbox - https://doi.org/10.1093/bioinformatics/btaa236☆45Updated 3 years ago
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆18Updated 5 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- GraphProt: modelling binding preferences of RNA-binding proteins☆21Updated 6 years ago
- Converts Ensembl, Uniprot, and HGNC IDs to Entrez Gene Id☆45Updated last year
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆68Updated last week
- This repository contains the tensorflow implementation of "GNE: A deep learning framework for gene network inference by aggregating biolo…☆31Updated 4 years ago
- Toolbox - generic utilities for data processing (e.g., parsing, proximity, guild scoring, etc...)☆111Updated 3 years ago
- HLA-II ligand predictor.☆44Updated 2 years ago
- ☆50Updated 4 years ago
- Python interface to running command-line and web-based MHC binding predictors☆98Updated 9 months ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools☆130Updated 2 years ago
- Biological Network Integration using Convolutions☆62Updated last year
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- MOLI: Multi-Omics Late Integration with deep neural networks for drug response prediction☆55Updated 4 years ago
- CMap Notebooks for LINCS 2020 Workshop☆46Updated 3 years ago
- CNN architecture for predicting DNA binding sites for Transcription Factors☆52Updated 6 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆30Updated last year
- predicting expression effects of human genome variants ab initio from sequence☆128Updated 5 months ago
- Python implementation of Spatial Analysis of Functional Enrichment (SAFE)☆41Updated 3 months ago
- ☆38Updated last year
- GeneWalk identifies relevant gene functions for a biological context using network representation learning☆131Updated 11 months ago
- Function prediction using a deep ontology-aware classifier☆84Updated 2 years ago
- Orientation of the protein-protein interaction network using network diffusion techniques☆15Updated 4 years ago
- Prize-Collecting Steiner Forests for Interactomes☆60Updated last year
- ☆10Updated 5 years ago